View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8392_low_4 (Length: 394)
Name: NF8392_low_4
Description: NF8392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8392_low_4 |
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| [»] chr3 (12 HSPs) |
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| [»] scaffold0019 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 32 - 394
Target Start/End: Original strand, 678900 - 679262
Alignment:
| Q |
32 |
actatcaaggttatcaaaatctcgattcaaatcgtaagatcgtgtgatcttaattgtcccacacaagaaatcctgtacaagatcacttgctgagaaatcc |
131 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
678900 |
actatcaaggttatcaaaatctcgattcaaatcgtaagatcgtgtgatcttaattgtcccacacaagaaatcctgtacaagatcacttgctgagaaatcc |
678999 |
T |
|
| Q |
132 |
tgtacaaaatataaaacttaatgtacaatatgattaatttagcactaacaacacataaagttaccacgagaataataacatgttaatttctttagaaaat |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
679000 |
tgtacaaaatataaaacttaatgtacaatatgattaatttagcactaacaacacataaagttaccacgagaataataacatgttaatttctttagaaaat |
679099 |
T |
|
| Q |
232 |
tgatgactaacatgtatggtgggaagccctatagagcagtcgactaggatgagcactaagccacatacccaagcactcatatataaggataaacatgttg |
331 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
679100 |
tgatgactaacatgtatggtgggaagccctatagagcagtcgactaggatgagcactaagccacatacccaagcactcatatataaggataaacatgttg |
679199 |
T |
|
| Q |
332 |
acattctgttaacaacctcaccttttacctgtctaggaaaatactcaaatatacgcagcattc |
394 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
679200 |
acattctgttaacaacctcaccttttacctgtctaggaaaatactcaaatatacgcagcattc |
679262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 136 - 394
Target Start/End: Original strand, 750811 - 751069
Alignment:
| Q |
136 |
caaaatataaaacttaatgtacaatatgattaatttagcactaacaacacataaagttaccacgagaataataacatgttaatttctttagaaaattgat |
235 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
750811 |
caaaatataaaacttaatgtacaatatgattaatttagcactaacaacacataaagttaccacgagaataataacatgttaatttctttagaaaattgat |
750910 |
T |
|
| Q |
236 |
gactaacatgtatggtgggaagccctatagagcagtcgactaggatgagcactaagccacatacccaagcactcatatataaggataaacatgttgacat |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
750911 |
gactaacatgtatggtgggaagccctatagagcagtcgactaggatgagcactaagccacatacccaagcactcatatataaggataaacatgttgacat |
751010 |
T |
|
| Q |
336 |
tctgttaacaacctcaccttttacctgtctaggaaaatactcaaatatacgcagcattc |
394 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
751011 |
tctgttaacaacctcaccttttacctgtctaggaaaatactcaaatatacgcagcattc |
751069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 143 - 383
Target Start/End: Complemental strand, 2632953 - 2632719
Alignment:
| Q |
143 |
taaaacttaatgtacaatatgattaatttagcactaacaacacataaagttaccacgagaataataa-catgttaatttctttagaaaattgatgactaa |
241 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||| ||||||| ||||||||| || | |||||| ||||||||||| |||| ||||||||||||||| |
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| T |
2632953 |
taaaactgaatgtacaatatgattaattcagcactagcaacaca--aagttaccaagaaattaataaacatgttaatttgtttaaaaaattgatgactaa |
2632856 |
T |
|
| Q |
242 |
catgtatggtgggaagccctatagagcagtcgactaggatgagcactaagccacatacccaagcactcatatataaggataaacatgttgacattctgtt |
341 |
Q |
| |
|
||||||||| ||||||| ||| ||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
2632855 |
catgtatgg-gggaagctctacagagcagtcaactagaatgagcactaagccacatacccaagcactc----gcaaggataaacatgtttccattctgtt |
2632761 |
T |
|
| Q |
342 |
aacaacctcaccttttacctgtctaggaaaatactcaaatat |
383 |
Q |
| |
|
|||||||||||||||| | ||| ||||||||||||||||| |
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| T |
2632760 |
aacaacctcaccttttcattatcttggaaaatactcaaatat |
2632719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 136 - 298
Target Start/End: Original strand, 9564654 - 9564816
Alignment:
| Q |
136 |
caaaatataaaacttaatgtacaatatgattaatttagcactaacaacacataaagttaccacgagaataataacatgttaatttctttagaaaattgat |
235 |
Q |
| |
|
||||||| |||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||| || | |||||| |||||||||||||||||||||| || |
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|
| T |
9564654 |
caaaataaaaaacttattgtactatatgattaatttagcattaacaacacataaagttcccaagaaattaataaaatgttaatttctttagaaaatttat |
9564753 |
T |
|
| Q |
236 |
gactaacatgtatggtgggaagccctatagagcagtcgactaggatgagcactaagccacata |
298 |
Q |
| |
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||||||||||||||| ||||||| ||||||||||||| |||||||||| |||||||||||||| |
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| T |
9564754 |
gactaacatgtatggagggaagctctatagagcagtcaactaggatgaacactaagccacata |
9564816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 750064 - 750174
Alignment:
| Q |
19 |
tgaatttgtgcatactatcaaggttatcaaaa-tctcgattcaaatcgtaagatcgtgtgatcttaattgtcccacacaagaaatcctgtacaagatcac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
750064 |
tgaatttgtgcatactatcaaggttatcaaaaatctcgattcaaatcgtaagatcgtgtgatcttaattgtcccacacaagaaatcctgtacaagatcac |
750163 |
T |
|
| Q |
118 |
ttgctgagaaa |
128 |
Q |
| |
|
||||||||||| |
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| T |
750164 |
ttgctgagaaa |
750174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 144 - 354
Target Start/End: Original strand, 7317339 - 7317545
Alignment:
| Q |
144 |
aaaacttaatgtacaatatgattaatttagcactaacaacacataaagttaccacgagaataataacatgttaatttctttagaaaattgatgactaaca |
243 |
Q |
| |
|
|||||| ||| ||| ||||||||| || ||||||| ||||||||||||| ||| || | |||||||||||||| |||||||||| |||||||||||||| |
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|
| T |
7317339 |
aaaactgaatatactatatgattatttcagcactagaaacacataaagttgccaagaaattaataacatgttaaattctttagaagattgatgactaaca |
7317438 |
T |
|
| Q |
244 |
tgtatggtgggaagccctatagagcagtcgactaggatgagcactaagccacatacccaagcactcatatataaggataaacatgttgacattctgttaa |
343 |
Q |
| |
|
|| || | |||||| || ||||| | | ||||||||||| |||||| ||| || ||||||||| |||| |||||||||||||| |||||||||| |
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| T |
7317439 |
tgaatagagggaagttgtacagagcgggcaactaggatgagtactaagtcacctatccaagcact----gataatgataaacatgttgatattctgttaa |
7317534 |
T |
|
| Q |
344 |
caacctcacct |
354 |
Q |
| |
|
||||||||||| |
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|
| T |
7317535 |
caacctcacct |
7317545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 159 - 283
Target Start/End: Original strand, 667951 - 668075
Alignment:
| Q |
159 |
atatgattaatttagcactaacaacacataaagttaccacgagaataataacatgttaatttctttagaaaattgatgactaacatgtatggtgggaagc |
258 |
Q |
| |
|
||||||||| || ||||||||||||||||||| || ||| || | |||||| ||||||| || ||||||||||||||||||||||||||||| ||||||| |
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| T |
667951 |
atatgattatttcagcactaacaacacataaaattgccaagaaattaataaaatgttaaattgtttagaaaattgatgactaacatgtatggagggaagc |
668050 |
T |
|
| Q |
259 |
cctatagagcagtcgactaggatga |
283 |
Q |
| |
|
||| ||||||| |||||||||| |
|
|
| T |
668051 |
tctacagagcaggaaactaggatga |
668075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 144 - 240
Target Start/End: Original strand, 2642522 - 2642618
Alignment:
| Q |
144 |
aaaacttaatgtacaatatgattaatttagcactaacaacacataaagttaccacgagaataataacatgttaatttctttagaaaattgatgacta |
240 |
Q |
| |
|
|||||| ||||||| |||||||||||| ||||||| ||| |||||||||||| || | ||||||||||||||||||||||||||| | ||||||| |
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|
| T |
2642522 |
aaaactgaatgtactatatgattaattcagcactagcaaggaataaagttaccaagaaattaataacatgttaatttctttagaaaactaatgacta |
2642618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 177 - 258
Target Start/End: Original strand, 7339748 - 7339829
Alignment:
| Q |
177 |
taacaacacataaagttaccacgagaataataacatgttaatttctttagaaaattgatgactaacatgtatggtgggaagc |
258 |
Q |
| |
|
|||||||||||||||||| | || | |||||| |||||| |||||||||||||||||||||||| |||||||| ||||||| |
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|
| T |
7339748 |
taacaacacataaagttaataagaaattaataaaatgttactttctttagaaaattgatgactaatatgtatggagggaagc |
7339829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 325 - 382
Target Start/End: Original strand, 9564819 - 9564876
Alignment:
| Q |
325 |
catgttgacattctgttaacaacctcaccttttacctgtctaggaaaatactcaaata |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
9564819 |
catgttgacattctgttaacaacctcaccttttcactgtcttggaaaatactcaaata |
9564876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 237
Target Start/End: Original strand, 2650058 - 2650136
Alignment:
| Q |
159 |
atatgattaatttagcactaacaacacataaagttaccacgagaataataacatgttaatttctttagaaaattgatga |
237 |
Q |
| |
|
||||||| |||| ||||| | ||| ||||||||||||| || | ||||||||||| || ||||||||||||||||||| |
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|
| T |
2650058 |
atatgataaattaagcaccagcaaggcataaagttaccaagaaattaataacatgtaaacttctttagaaaattgatga |
2650136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 1429715 - 1429766
Alignment:
| Q |
19 |
tgaatttgtgcatactatcaaggttatcaaaatctcgattcaaatcgtaaga |
70 |
Q |
| |
|
||||||||||||| |||||||||| |||||||| ||||| ||||||||||| |
|
|
| T |
1429715 |
tgaatttgtgcatgatatcaaggttttcaaaatcacgatttaaatcgtaaga |
1429766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 159 - 357
Target Start/End: Complemental strand, 1554 - 1360
Alignment:
| Q |
159 |
atatgattaatttagcactaacaacacataaagttaccacgagaataataacatgttaatttctttagaaaattgatgactaacatgtatggtgggaagc |
258 |
Q |
| |
|
|||||||||||| ||| ||| |||| || ||||||||| || | |||||| ||||||| ||||||||||||||||| ||||||| |||| | ||||||| |
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|
| T |
1554 |
atatgattaattccgcaataa-aacatatgaagttaccaagaaattaataatatgttaaattctttagaaaattgattactaacaggtatagagggaagc |
1456 |
T |
|
| Q |
259 |
cctatagagcagtc-gactaggatgagcactaagccacatacccaagcactcatatataaggataaacatgttgacattctgttaacaacctcacctttt |
357 |
Q |
| |
|
||| | || | | ||||||||||||||||||||||||| |||| || | ||| |||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
1455 |
tctagaaagtgggcaaactaggatgagcactaagccacatatgcaagtaccc----gtaatgataaatatgttgacattctgttaacaaccacacctttt |
1360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 2110 - 2001
Alignment:
| Q |
19 |
tgaatttgtgcatactatcaaggttatcaaaatctcgattcaaatcgtaagatcgtgtgatcttaattgtcccacacaagaaatcctgtacaagatcact |
118 |
Q |
| |
|
||||| |||||||||||||| |||||||||| || ||||| |||| |||||||| || ||||||||| ||||| ||||| | |||| ||||| |||| | |
|
|
| T |
2110 |
tgaatctgtgcatactatcagggttatcaaagtcacgatttaaattgtaagatcatgcgatcttaatggtcccccacaatagatccaatacaaaatcatt |
2011 |
T |
|
| Q |
119 |
tgctgagaaa |
128 |
Q |
| |
|
||||| |||| |
|
|
| T |
2010 |
tgctgtgaaa |
2001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 246
Target Start/End: Original strand, 2289907 - 2289947
Alignment:
| Q |
206 |
ataacatgttaatttctttagaaaattgatgactaacatgt |
246 |
Q |
| |
|
|||| |||||||||||||||||||||| || |||||||||| |
|
|
| T |
2289907 |
ataatatgttaatttctttagaaaattaattactaacatgt |
2289947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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