View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8393_high_4 (Length: 246)
Name: NF8393_high_4
Description: NF8393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8393_high_4 |
 | |
|
| [»] scaffold0179 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0179 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 3995 - 3771
Alignment:
| Q |
16 |
cagtatgctatgaaaatatatgttgaagtttgaagagtgtgtatgataaaaactttcaacgatatataatgtcaactgtgtaaaaccttcatctcctagc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3995 |
cagtatgctatgaaaatatatgttgaagtttgaagagtgtgtatgataaaaactttcaacgatatataatgtcaactgtgtaaaaccttcatctcctagc |
3896 |
T |
|
| Q |
116 |
caccaaaataagtgaaacaatgacacgaaataaaagattcggctgtgaaaataatgaaagataacttcaaaacgcaccaaataaaatatgcatctgggta |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3895 |
caccaaaataagtgaaacaatgacacgaaataaaagattcagctgtgaaaataatgaaagataacttcaaaacgcaccaaataaaatatgcatctgggta |
3796 |
T |
|
| Q |
216 |
tatgtcacctgtgtaaaaccttctt |
240 |
Q |
| |
|
| ||||||||||||||||||||||| |
|
|
| T |
3795 |
tttgtcacctgtgtaaaaccttctt |
3771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University