View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8393_low_1 (Length: 528)
Name: NF8393_low_1
Description: NF8393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8393_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 13 - 147
Target Start/End: Original strand, 6987376 - 6987510
Alignment:
| Q |
13 |
gattattctcctctttcacctcttactcatactactcattcttctgattgtcttaaccttggtcgttcttcttctccttcttttccttattaccataatt |
112 |
Q |
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| T |
6987376 |
gattcttctcctctttcacctctaactcatactactcattcttctgattgtcttaaccttggtcgttcttcttctccttcttttccttattaccataatt |
6987475 |
T |
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| Q |
113 |
ggaaacttgattttggtgactcacttactccaaag |
147 |
Q |
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| T |
6987476 |
ggaaacttgattttggtgactcacttactccaaag |
6987510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 368 - 441
Target Start/End: Original strand, 6987734 - 6987807
Alignment:
| Q |
368 |
gtgtatcagaagtcatatgatccgtgtttgtaaatttggctgatgtagaaatttgttgttgattagtttgagtt |
441 |
Q |
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| T |
6987734 |
gtgtatcagaagtcatatgatctgtgtttataaatttggctgatgtagaaatttattgttgattagtttgagtt |
6987807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 265
Target Start/End: Original strand, 6987591 - 6987628
Alignment:
| Q |
228 |
caagcaaaagggctggctttatgatgatgatttatatc |
265 |
Q |
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| T |
6987591 |
caagcaaaagggatggctttatgatgatgatttgtatc |
6987628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 47 - 125
Target Start/End: Original strand, 3626996 - 3627074
Alignment:
| Q |
47 |
ctcattcttctgattgtcttaaccttggtcgttcttcttctccttcttttccttattaccataattggaaacttgattt |
125 |
Q |
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| T |
3626996 |
ctcattcttctgcttgtcttcaccttggttgctcttattctctttcttttccttattatcatatctggaagcttgattt |
3627074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 507
Target Start/End: Complemental strand, 20427870 - 20427824
Alignment:
| Q |
461 |
tttgaacgtgtaaagagaagacccggagatgctgttgtaaggagagt |
507 |
Q |
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| T |
20427870 |
tttgaacgtgtatagagaagacccgtagatgccgttgtaagaagagt |
20427824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 469 - 507
Target Start/End: Complemental strand, 25979457 - 25979419
Alignment:
| Q |
469 |
tgtaaagagaagacccggagatgctgttgtaaggagagt |
507 |
Q |
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| T |
25979457 |
tgtagagagaagacccgtagatgctgttgtaaggagagt |
25979419 |
T |
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