View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8393_low_5 (Length: 249)
Name: NF8393_low_5
Description: NF8393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8393_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 49464691 - 49464450
Alignment:
| Q |
1 |
gttacatcacatggtatgtaatcatgatcaaaagtgcagtcacaaatcatgttcatttgaattattttagccattgctgagttgattgcatatttccaga |
100 |
Q |
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| T |
49464691 |
gttacatcacatggtatgtaatcatgatcaaaagtgcagtcacaaatcatgttcatttgaattattttagccattgctgagttgattgcatatttccaga |
49464592 |
T |
|
| Q |
101 |
gatattgtgattgaatattcacagaaaataaaggagttgggtttcacaatctttgagttgttgtcagaggcactgggacttaactcttcttacctcaaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
49464591 |
gatattgtgattgaatattcacagaaaataaaggagttgggtttcacaatctttgagttgttgtcagaggcactaggacttaactcttcttacctcaaag |
49464492 |
T |
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| Q |
201 |
agttgaattgtgctgaaggactctttattttgggtctctgct |
242 |
Q |
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| T |
49464491 |
agttgaattgtgctgaaggactctttattttgggtcactgct |
49464450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 37 - 236
Target Start/End: Original strand, 29463616 - 29463815
Alignment:
| Q |
37 |
cagtcacaaatcatgttcatttgaattattttagccattgctgagttgattgcatatttccagagatattgtgattgaatattcacagaaaataaaggag |
136 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||| || ||||||||||| || ||||||||||||||||||||||||||| ||||||||| | |
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| T |
29463616 |
cagttacaaatcatgttcatttgaattattttagtcattgatggattgattgcatacttgcagagatattgtgattgaatattcacaaaaaataaagaat |
29463715 |
T |
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| Q |
137 |
ttgggtttcacaatctttgagttgttgtcagaggcactgggacttaactcttcttacctcaaagagttgaattgtgctgaaggactctttattttgggtc |
236 |
Q |
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| T |
29463716 |
ttgggtttcacaatctttgagttattgtcagaggcactaggacttaacccttcttacctaaaagagtttggttgtgctgaaggactctttactttgggtc |
29463815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 53 - 236
Target Start/End: Original strand, 19845841 - 19846024
Alignment:
| Q |
53 |
tcatttgaattattttagccattgctgagttgattgcatatttccagagatattgtgattgaatattcacagaaaataaaggagttgggtttcacaatct |
152 |
Q |
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||||||||||| |||| |||| | |||||||| | |||| || ||||||||||||||||||||||||||||||||||| || || ||||||| ||||| |
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| T |
19845841 |
tcatttgaattgatttaaccatggttgagttgactacatacttgcagagatattgtgattgaatattcacagaaaataagtgatttaggtttcagaatct |
19845940 |
T |
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| Q |
153 |
ttgagttgttgtcagaggcactgggacttaactcttcttacctcaaagagttgaattgtgctgaaggactctttattttgggtc |
236 |
Q |
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| T |
19845941 |
ttgagttgttgtcagaggcagtaggacttgatccttcttacttaaaagagttgaagtgtgctgaaggaatctatattatgggtc |
19846024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 97 - 229
Target Start/End: Original strand, 19890841 - 19890973
Alignment:
| Q |
97 |
cagagatattgtgattgaatattcacagaaaataaaggagttgggtttcacaatctttgagttgttgtcagaggcactgggacttaactcttcttacctc |
196 |
Q |
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|||||||| ||||||| ||||||| || ||||||| ||| |||||||||| |||||||||||| ||||| |||||||| |||||| | | ||||||| |
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| T |
19890841 |
cagagatagtgtgattaaatattcccaaaaaataagggatttgggtttcataatctttgagttattgtcggaggcactaggacttgatcgtgattacctc |
19890940 |
T |
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| Q |
197 |
aaagagttgaattgtgctgaaggactctttatt |
229 |
Q |
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| T |
19890941 |
aaagagttaaattgttgtgaaggactctttatt |
19890973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 1093938 - 1094178
Alignment:
| Q |
1 |
gttacatcacatggtatgtaatcatgatcaaaagtgca-----gtcacaaatcatgttcatttgaattattttagccattgctgagttgattgcatattt |
95 |
Q |
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||||||||||||| ||| ||||||||| ||||||||| || ||||||||||| ||||||||||||| ||| || || || ||||||||||| || |
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| T |
1093938 |
gttacatcacatgacatgcaatcatgataaaaagtgcatttcagtaacaaatcatgtacatttgaattattatagtcactgatggattgattgcatactt |
1094037 |
T |
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| Q |
96 |
ccagagatattgtgattgaatattcacagaaaataaaggagttgggtttcacaatctttgagttgttgtcagaggcactgggacttaactcttcttacct |
195 |
Q |
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||||||||||||||||||||||||||| ||||||||| | |||||||||| ||||||||||||||| ||||||||||| ||| ||||| |||||||||| |
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| T |
1094038 |
gcagagatattgtgattgaatattcacaaaaaataaagaatttgggtttcaaaatctttgagttgttatcagaggcactaggatttaacccttcttacct |
1094137 |
T |
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| Q |
196 |
caaagagttgaattgtgctgaaggactctttattttgggtc |
236 |
Q |
| |
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|||||||| |||||| |||||||| |||| |||||||| |
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| T |
1094138 |
taaagagtttggttgtgccgaaggactatttactttgggtc |
1094178 |
T |
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