View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8394_high_1 (Length: 653)

Name: NF8394_high_1
Description: NF8394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8394_high_1
NF8394_high_1
[»] chr1 (4 HSPs)
chr1 (15-313)||(50018609-50018907)
chr1 (386-625)||(50019061-50019299)
chr1 (430-636)||(11474230-11474436)
chr1 (430-636)||(28245615-28245821)
[»] chr6 (2 HSPs)
chr6 (386-636)||(19307249-19307498)
chr6 (430-636)||(10123842-10124048)
[»] chr2 (3 HSPs)
chr2 (430-636)||(38252430-38252636)
chr2 (430-636)||(43156906-43157112)
chr2 (106-144)||(14848652-14848690)
[»] chr5 (2 HSPs)
chr5 (386-636)||(25382343-25382594)
chr5 (105-139)||(2687823-2687857)
[»] chr4 (2 HSPs)
chr4 (473-636)||(48794173-48794336)
chr4 (105-137)||(32263974-32264006)
[»] chr7 (1 HSPs)
chr7 (298-373)||(22490766-22490841)
[»] chr8 (5 HSPs)
chr8 (197-260)||(24357884-24357947)
chr8 (105-139)||(18055070-18055104)
chr8 (106-138)||(27220871-27220903)
chr8 (105-144)||(18294941-18294980)
chr8 (399-433)||(24357729-24357763)
[»] chr3 (1 HSPs)
chr3 (105-139)||(17926062-17926096)


Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 15 - 313
Target Start/End: Original strand, 50018609 - 50018907
Alignment:
Q  15 cagagacgaacaaatgacataaactcaataagccgtcgttacaaataattcaaagtaagaaaatatgcattcattccattgcaaaataattacaaagatg 114  Q
    |||| |||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50018609 cagaaacgaacaaatgacagaaactcaataagccgttgttacaaatgattcaaagtaagaaaatatgcattcattccattgcaaaataattacaaagatg 50018708  T
Q  115 ccgcatataggcgtaacatccaccagaac------aaccaaaaccaaattccaca-agaaattcaaaacaaccccactaacgaaacaatgctaaatagcg 207  Q
    |||||||||||||||||||||| ||||||      |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  50018709 ccgcatataggcgtaacatccaacagaacaaccaaaaccaaaaccaaattccacacaaaaattcaaaacaaccccactaacgaaacaatgctaaatagcg 50018808  T
Q  208 taagatatgacactaaaatccaatgatgacctccggaattcagacccataactatgccacaacctacaacctnnnnnnnctacaacaccacaaaccggaa 307  Q
    |||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||| |||||||||          |||||||||||||||||||||    
T  50018809 taagatatgacattgaaattcaatgatgacctccggaattcagacccataactatgccataacctacaa-------aaactacaacaccacaaaccggaa 50018901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 386 - 625
Target Start/End: Original strand, 50019061 - 50019299
Alignment:
Q  386 caaaaacagttgctgcactgtcatgacagcagcagcgcccgtgcccccctatgcattcattccattcaaataggctggccgccctattgcctacattaat 485  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  50019061 caaaaacagttgctgcactgtcatgacagccgcagcgcccgtgcccc-ctatgcattcattccattcaaataggctggcctccctattgcctacattaat 50019159  T
Q  486 aacaatttaaaaattagaatcacgatacttgttaaatgtatgaatagtttcttatgaatttgcttttgaaattaccattagcatggcagtgtaattgact 585  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||    
T  50019160 aacaacttaaaaattagaatcacgatacttgttaaatgtatgaatagttccttatgaatttgcttttgaaattaccattagcatgacaatgtaattgact 50019259  T
Q  586 tgatcctcatatacttgtggtggctcataagttggaggcg 625  Q
    |||||||||| | ||||||| |||||||||||||||||||    
T  50019260 tgatcctcatgtgcttgtgggggctcataagttggaggcg 50019299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 430 - 636
Target Start/End: Complemental strand, 11474436 - 11474230
Alignment:
Q  430 ccccctatgcattcattccattcaaataggctggccgccctattgcctacattaataacaatttaaaaattagaatcacgatacttgttaaatgtatgaa 529  Q
    |||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||    
T  11474436 ccccctatgcattcattccattcaaataggttggcccccctatttcctacattaataacaacttaaaaattagcatcacgatacttgttgaatgtatgaa 11474337  T
Q  530 tagtttcttatgaatttgcttttgaaattaccattagcatggcagtgtaattgacttgatcctcatatacttgtggtggctcataagttggaggcgtaga 629  Q
    |||||  ||||||||||| |||||||||||||||||||||||| |||||||||||||||  ||||| | ||||||| ||||||||||||| ||||| |||    
T  11474336 tagttctttatgaatttgtttttgaaattaccattagcatggctgtgtaattgacttgagactcatgtgcttgtgggggctcataagttgtaggcgcaga 11474237  T
Q  630 acaagat 636  Q
    |||||||    
T  11474236 acaagat 11474230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 430 - 636
Target Start/End: Original strand, 28245615 - 28245821
Alignment:
Q  430 ccccctatgcattcattccattcaaataggctggccgccctattgcctacattaataacaatttaaaaattagaatcacgatacttgttaaatgtatgaa 529  Q
    |||||||||||||||||||||||||||||| ||||| | ||||| |||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||    
T  28245615 ccccctatgcattcattccattcaaataggttggcccctctatttcctacattaataacaacttaaaaattagcatcacgatacttgttgaatgtatgaa 28245714  T
Q  530 tagtttcttatgaatttgcttttgaaattaccattagcatggcagtgtaattgacttgatcctcatatacttgtggtggctcataagttggaggcgtaga 629  Q
    |||||  ||||||||||| |||||||||||||||||||||||  |||||||||||||||  ||||| | ||||||| ||||||||||||| ||||| | |    
T  28245715 tagttcattatgaatttgtttttgaaattaccattagcatggttgtgtaattgacttgagactcatgtgcttgtgggggctcataagttgtaggcgcaaa 28245814  T
Q  630 acaagat 636  Q
    |||||||    
T  28245815 acaagat 28245821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 143; Significance: 9e-75; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 386 - 636
Target Start/End: Original strand, 19307249 - 19307498
Alignment:
Q  386 caaaaacagttgctgcactgtcatgacagcagcagcgcccgtgcccccctatgcattcattccattcaaataggctggccgccctattgcctacattaat 485  Q
    ||||||||||||||||||| ||||||  |||||| |||| |||||||| |||| |||||||||||||||||||| ||||| | ||||| |||||||||||    
T  19307249 caaaaacagttgctgcactttcatgaatgcagcaacgccagtgccccc-tatgaattcattccattcaaataggttggcccctctatttcctacattaat 19307347  T
Q  486 aacaatttaaaaattagaatcacgatacttgttaaatgtatgaatagtttcttatgaatttgcttttgaaattaccattagcatggcagtgtaattgact 585  Q
    ||||| ||||||||||| ||||||||||||||| |||||||||||||||  ||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  19307348 aacaacttaaaaattagcatcacgatacttgttgaatgtatgaatagttcattatgaatttgtttttgaaattaccattagcatggctgtgtaattgact 19307447  T
Q  586 tgatcctcatatacttgtggtggctcataagttggaggcgtagaacaagat 636  Q
    |||  ||||| | ||||||| ||||||||||||| ||||| | ||||||||    
T  19307448 tgagactcatgtgcttgtgggggctcataagttgtaggcgcaaaacaagat 19307498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 430 - 636
Target Start/End: Original strand, 10123842 - 10124048
Alignment:
Q  430 ccccctatgcattcattccattcaaataggctggccgccctattgcctacattaataacaatttaaaaattagaatcacgatacttgttaaatgtatgaa 529  Q
    |||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||    
T  10123842 ccccctatgcattcattccattcaaataggttggcccccctatttcctacattaataacaacttaaaaattagcatcacgatacttgttgaatgtatgaa 10123941  T
Q  530 tagtttcttatgaatttgcttttgaaattaccattagcatggcagtgtaattgacttgatcctcatatacttgtggtggctcataagttggaggcgtaga 629  Q
    |||||   |||||||||| |||||||||||||||||||||||| |||||||||||||||  ||||| | ||||||| ||||||||||||| ||||| | |    
T  10123942 tagttcaatatgaatttgtttttgaaattaccattagcatggctgtgtaattgacttgagactcatgtgcttgtgggggctcataagttgtaggcgcata 10124041  T
Q  630 acaagat 636  Q
    |||||||    
T  10124042 acaagat 10124048  T

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Target: chr2 (Bit Score: 139; Significance: 2e-72; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 430 - 636
Target Start/End: Original strand, 38252430 - 38252636
Alignment:
Q  430 ccccctatgcattcattccattcaaataggctggccgccctattgcctacattaataacaatttaaaaattagaatcacgatacttgttaaatgtatgaa 529  Q
    |||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||    
T  38252430 ccccctatgcattcattccattcaaataggttggcccccctatttcctacattaataacaacttaaaaattagcatcacgatacttgttgaatgtatgaa 38252529  T
Q  530 tagtttcttatgaatttgcttttgaaattaccattagcatggcagtgtaattgacttgatcctcatatacttgtggtggctcataagttggaggcgtaga 629  Q
    |||||  ||||||||||| |||||||||||||||||||||||| |||||||||||||||  ||||| | ||||||| ||||||||||||| ||||| |||    
T  38252530 tagttcattatgaatttgtttttgaaattaccattagcatggctgtgtaattgacttgagactcatgtgcttgtgggggctcataagttgtaggcgcaga 38252629  T
Q  630 acaagat 636  Q
    |||||||    
T  38252630 acaagat 38252636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 430 - 636
Target Start/End: Complemental strand, 43157112 - 43156906
Alignment:
Q  430 ccccctatgcattcattccattcaaataggctggccgccctattgcctacattaataacaatttaaaaattagaatcacgatacttgttaaatgtatgaa 529  Q
    |||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||    
T  43157112 ccccctatgcattcattccattcaaataggttggcccccctatttcctacattaataacaacttaaaaattagcatcacgatacttgttgaatgtatgaa 43157013  T
Q  530 tagtttcttatgaatttgcttttgaaattaccattagcatggcagtgtaattgacttgatcctcatatacttgtggtggctcataagttggaggcgtaga 629  Q
    |||||  ||||||||||| |||||||||||||||||||||||| |||||||||||||||  ||||| | ||||||| ||||||||||||| ||||| |||    
T  43157012 tagttcattatgaatttgtttttgaaattaccattagcatggctgtgtaattgacttgagactcatgtgcttgtgggggctcataagttgtaggcgcaga 43156913  T
Q  630 acaagat 636  Q
    |||||||    
T  43156912 acaagat 43156906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 106 - 144
Target Start/End: Original strand, 14848652 - 14848690
Alignment:
Q  106 acaaagatgccgcatataggcgtaacatccaccagaaca 144  Q
    |||||||||||||||||| ||||||||||||||| ||||    
T  14848652 acaaagatgccgcatataagcgtaacatccaccaaaaca 14848690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 136; Significance: 1e-70; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 386 - 636
Target Start/End: Complemental strand, 25382594 - 25382343
Alignment:
Q  386 caaaaacagttgctgcactgtcatgacagcagcagcgcccgtgcccccctatgcattcattccattcaaataggctggccgccctattgcctacattaat 485  Q
    |||||||| ||||| |||| ||||||  ||| ||| ||  |||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||    
T  25382594 caaaaacaattgctacactttcatgaatgcaacagtgctagtgcccccctatgcattcattccattcaaataggttggcccccctatttcctacattaat 25382495  T
Q  486 aacaatttaaaaattagaatcacgatacttgttaaatgtatgaatagtttcttatgaatttgcttttgaaattaccattagcatggcagtgtaattgact 585  Q
    ||||| ||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  25382494 aacaacttaaaaattagcatcacgatacttgttgaatgtatgaatagttccttatgaatttgtttttgaaattaccattagcatggctgtgtaattgact 25382395  T
Q  586 tgatcctcatatacttgt-ggtggctcataagttggaggcgtagaacaagat 636  Q
    |||  || || | ||||| || || |||||||||| ||||| ||||||||||    
T  25382394 tgagacttatgtgcttgtggggggatcataagttgtaggcgcagaacaagat 25382343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 105 - 139
Target Start/End: Original strand, 2687823 - 2687857
Alignment:
Q  105 tacaaagatgccgcatataggcgtaacatccacca 139  Q
    ||||||||||||| |||||||||||||||||||||    
T  2687823 tacaaagatgccgtatataggcgtaacatccacca 2687857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 2e-51; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 473 - 636
Target Start/End: Complemental strand, 48794336 - 48794173
Alignment:
Q  473 tgcctacattaataacaatttaaaaattagaatcacgatacttgttaaatgtatgaatagtttcttatgaatttgcttttgaaattaccattagcatggc 572  Q
    |||||||||||||||||| ||||||||||| |||||||||| ||||||||||||| |||||| |||||||||||| ||||||||||||||| ||||||||    
T  48794336 tgcctacattaataacaacttaaaaattagcatcacgatacatgttaaatgtatgtatagttccttatgaatttgtttttgaaattaccatcagcatggc 48794237  T
Q  573 agtgtaattgacttgatcctcatatacttgtggtggctcataagttggaggcgtagaacaagat 636  Q
     |||||||||| ||||||||||| | ||||||| ||| ||||||||||||| | ||||||||||    
T  48794236 tgtgtaattgaattgatcctcatgtgcttgtgggggcgcataagttggaggtgcagaacaagat 48794173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 105 - 137
Target Start/End: Complemental strand, 32264006 - 32263974
Alignment:
Q  105 tacaaagatgccgcatataggcgtaacatccac 137  Q
    |||||||||||||||||||| ||||||||||||    
T  32264006 tacaaagatgccgcatatagacgtaacatccac 32263974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 298 - 373
Target Start/End: Original strand, 22490766 - 22490841
Alignment:
Q  298 caaaccggaaccccccagggaccggcagcggccataacagacacaaaacaacagcagaaaataggtatcaaaccag 373  Q
    ||||||||||||||||||| ||| |||||| |||||||| |||||||||| |||||||||| ||||||||||||||    
T  22490766 caaaccggaaccccccaggcacctgcagcgtccataacatacacaaaacagcagcagaaaacaggtatcaaaccag 22490841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 197 - 260
Target Start/End: Complemental strand, 24357947 - 24357884
Alignment:
Q  197 gctaaatagcgtaagatatgacactaaaatccaatgatgacctccggaattcagacccataact 260  Q
    ||||||||| ||||||||||||| | |||||||| |||||||| ||||||||||||||||||||    
T  24357947 gctaaatagtgtaagatatgacattgaaatccaaagatgacctacggaattcagacccataact 24357884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 139
Target Start/End: Complemental strand, 18055104 - 18055070
Alignment:
Q  105 tacaaagatgccgcatataggcgtaacatccacca 139  Q
    |||||||||||||||||||||||||||||||||||    
T  18055104 tacaaagatgccgcatataggcgtaacatccacca 18055070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 27220903 - 27220871
Alignment:
Q  106 acaaagatgccgcatataggcgtaacatccacc 138  Q
    |||||||||||||||||||||||||||||||||    
T  27220903 acaaagatgccgcatataggcgtaacatccacc 27220871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 144
Target Start/End: Complemental strand, 18294980 - 18294941
Alignment:
Q  105 tacaaagatgccgcatataggcgtaacatccaccagaaca 144  Q
    ||||||||||||||||||||| ||||||||||||| ||||    
T  18294980 tacaaagatgccgcatataggtgtaacatccaccaaaaca 18294941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 399 - 433
Target Start/End: Complemental strand, 24357763 - 24357729
Alignment:
Q  399 tgcactgtcatgacagcagcagcgcccgtgccccc 433  Q
    |||||||||||||||||||||||||| ||||||||    
T  24357763 tgcactgtcatgacagcagcagcgccagtgccccc 24357729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 105 - 139
Target Start/End: Original strand, 17926062 - 17926096
Alignment:
Q  105 tacaaagatgccgcatataggcgtaacatccacca 139  Q
    |||| ||||||||||||||||||||||||||||||    
T  17926062 tacagagatgccgcatataggcgtaacatccacca 17926096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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