View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8394_high_10 (Length: 339)
Name: NF8394_high_10
Description: NF8394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8394_high_10 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 40224185 - 40223839
Alignment:
| Q |
1 |
tactctttttattagtagtatattagattagattttgatgataaaaatatgatttctatctagtttataattttactcactaagttcttcaataaaactt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40224185 |
tactctttttattagtagtatattagattagattttgatgataaaaatatgatttctatctagtttataattttactcactaagttcttcaataaaactt |
40224086 |
T |
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| Q |
101 |
gttacaatagactcacggcttgtaacaaaacgggnnnnnnnngttcacactgtctaaaacaacaaaagaaacatttattttcaattttttaacttcaacc |
200 |
Q |
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| T |
40224085 |
gttacaatagactcacggcttgtaacaaaacgggaaaaaaaagttcacactgtctaaaacaacaaaaaaaacatttattttcaattttttaacttcaacc |
40223986 |
T |
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| Q |
201 |
attgcattcttatttatattgtcactctaacataatgaaaagtatgtttatctcgttctcc--------nnnnnnnnnnatttgaagccctctcttatga |
292 |
Q |
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|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40223985 |
attgaattcttatttatattgtcgctctaacataatgaaaagtatgtttatctcgttctccttttttttttatttttttatttgaagccctctcttatga |
40223886 |
T |
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| Q |
293 |
tacacctttatagttcatcaataataaatgagaaattatatttgtac |
339 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40223885 |
tacacctttatagttcatcaataataaatgagaaattatatttgtac |
40223839 |
T |
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