View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8394_high_13 (Length: 303)

Name: NF8394_high_13
Description: NF8394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8394_high_13
NF8394_high_13
[»] chr2 (1 HSPs)
chr2 (1-295)||(45236530-45236822)


Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 45236530 - 45236822
Alignment:
Q  1 atttcatcagatctgtcaaaatggcccatcaagagcacttattatacttgttttgctcttgaaggaaacctcaatgtcactccctactaactatgtgttt 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45236530 atttcatcatatctgtcaaaatggcccatcaagagcacttattatacttgttttgctcttgaaggaaacctcaatgtcactccctactaactatgtgttt 45236629  T
Q  101 tatagtttgtgaatgtgtgtaaggctactttttattcatttggactaagagaggaaaaggtgatggttctgattgctccacgttttgcatctttgacaag 200  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  45236630 tatagtttgtgaatgtgtgtaagactactttttattcatttggactaagag--gaaaaggtgatggttctgattgctccacgttttgcatctttgacaag 45236727  T
Q  201 gaaacatataaaattattcggcctattagaagtaataataatgcatataaaaagagagatgattgaagaataaaagggttacgaatagtattatc 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45236728 gaaacatataaaattattcggcctattagaagtaataataatgcatataaaaagagagatgattgaagaataaaagggttacgaatagtattatc 45236822  T

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