View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8394_high_17 (Length: 257)
Name: NF8394_high_17
Description: NF8394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8394_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 53089322 - 53089063
Alignment:
| Q |
1 |
atgatggagtttcaaaagaaaaggtatgtgacgttcgcgaatccaccgtctgtttctcatgtgatgttacctcaaggtgttgagaagttggaaaggcacc |
100 |
Q |
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| T |
53089322 |
atgatggagtttcaaaagaaaaggtatgtgacgttcgcgaatccaccgtctgtttctcatgtgatgttacctcaaggtgttgagaagttggaaaggcacc |
53089223 |
T |
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| Q |
101 |
cttctcttaggaagaagaagaagaagtcattgattccacttatcggaggtattttttcaaggaaaaagggaactagccaagaagttccatg--------- |
191 |
Q |
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| T |
53089222 |
cttctcttaggaagaagaagaagaagtcattgattccacttataggaggtattttttcaaggaaaaagggaactagccaagaagttccatgatgagtgac |
53089123 |
T |
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| Q |
192 |
--------atgaattttagcgagtataagtatgctatatgcattacattaccagaataat |
243 |
Q |
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| T |
53089122 |
gagtttgtatgaattttagcgagtataagtatgctatatgcatcacattaccagaataat |
53089063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 14334031 - 14333826
Alignment:
| Q |
1 |
atgatggagtttcaaaagaaaaggtatgtgacgttcgcgaatccaccgtctgtttctcatgtgatgttacctcaaggt---------gttgagaagttgg |
91 |
Q |
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| T |
14334031 |
atgatggaatttcaaaagaaaaggtatgtgacgttcgcgaatccaccgtcagtttctcatgtcatgttacctcaaggtcatcaaggtgttgagaagttgg |
14333932 |
T |
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| Q |
92 |
aaaggcacccttctcttaggaagaagaagaagaagtcattgattccacttatcggaggtattttttcaaggaaaaagggaactagccaagaagttccatg |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| |||||||||||||||| ||||||||||||||| |
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| T |
14333931 |
aaaggcacccttctcttaggaagaagaagaagaagtcattgattccacttattggaggcatattttctaggaaaaagggaactaaccaagaagttccatg |
14333832 |
T |
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| Q |
192 |
atgaat |
197 |
Q |
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|||||| |
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| T |
14333831 |
atgaat |
14333826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 192 - 243
Target Start/End: Complemental strand, 14333814 - 14333763
Alignment:
| Q |
192 |
atgaattttagcgagtataagtatgctatatgcattacattaccagaataat |
243 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
14333814 |
atgaattttagcgagtataagtatgcttcatgcattacattaccagattaat |
14333763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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