View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8394_high_6 (Length: 560)

Name: NF8394_high_6
Description: NF8394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8394_high_6
NF8394_high_6
[»] chr4 (4 HSPs)
chr4 (19-430)||(19457214-19457611)
chr4 (46-430)||(15018341-15018711)
chr4 (37-270)||(19459062-19459294)
chr4 (287-420)||(19458937-19459069)
[»] chr5 (1 HSPs)
chr5 (46-430)||(29950837-29951207)
[»] chr2 (6 HSPs)
chr2 (39-424)||(22299309-22299680)
chr2 (39-424)||(24806979-24807350)
chr2 (241-430)||(23732529-23732717)
chr2 (39-165)||(22300590-22300716)
chr2 (258-308)||(44793707-44793757)
chr2 (46-111)||(44793509-44793574)
[»] chr1 (2 HSPs)
chr1 (39-430)||(20189491-20189868)
chr1 (241-430)||(22063111-22063300)
[»] chr7 (1 HSPs)
chr7 (39-424)||(40998913-40999284)
[»] scaffold1778 (1 HSPs)
scaffold1778 (316-424)||(1258-1366)
[»] chr3 (1 HSPs)
chr3 (370-423)||(16348108-16348161)
[»] chr6 (2 HSPs)
chr6 (352-430)||(20417018-20417096)
chr6 (352-430)||(20416048-20416126)
[»] chr8 (1 HSPs)
chr8 (46-104)||(17277602-17277660)


Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 19 - 430
Target Start/End: Complemental strand, 19457611 - 19457214
Alignment:
Q  19 aattagctccggtagaaggtgagaatattaggttcccatcatactccccttcttcaagagaattagactttgaatttatagcttgattacctctagtgtc 118  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  19457611 aattagctccggtagagggtgagaatattaggttcccatcatactccccttcttcaagagaattagactttgaatttatagcttgattacctctggtgtc 19457512  T
Q  119 aaaaataaatctatagaattcatcacatggaatttccactttagagaattccactttagaaaactcttcgttttgattggaagaatttgttggattttcc 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||               ||||||||| ||||||||||||||||||||||||||||||    
T  19457511 aaaaataaatctatagaattcatcacatggaatttccactttaga---------------aaactcttcattttgattggaagaatttgttggattttcc 19457427  T
Q  219 tccccttgtgatttgtggagat-atcatctttccaaaacacataattttcttccacttgttgagaaaatttttcttcattctctttgtttccttcgtaac 317  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||    
T  19457426 tccccttgtgatttgtggacattatcatctttccaaaacacataattttcttccacttgttgagaaattttttcttcattctctttgtttccttcgtgac 19457327  T
Q  318 ataaagaaatgttaggcaattgaataatattagaagaagaatcccaacatttgaaaacacaaaccaacttataagaaggtactaatttaatagtaggtca 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19457326 ataaagaaatgttaggcaattgaataatattagaagaagaatcccaacatttgaaaacacaaaccaacttataagaaggtactaatttaatagtaggtca 19457227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 46 - 430
Target Start/End: Original strand, 15018341 - 15018711
Alignment:
Q  46 ttaggttcccatcatactccccttcttcaagagaattagactttgaatttatagcttgattacctctagtgtcaaaaataaatctatagaattcatcaca 145  Q
    ||||| || |||||||||| || |||||||||||||| ||| | ||||||||||||||| ||||||  | ||||||||||||||||| |||| |||||||    
T  15018341 ttaggatcacatcatactctccctcttcaagagaattcgacctcgaatttatagcttgaatacctcctgggtcaaaaataaatctatggaatccatcaca 15018440  T
Q  146 tggaatttccactttagagaattccactttagaaaactcttcgttttgattggaagaatttgttggattttcctccccttgtgatttgtggagat-atca 244  Q
    || ||      |||||         |||||||| | ||||||  ||| |||||||||||| |||   ||||| ||| ||| |||||| |||| || ||||    
T  15018441 tgtaa------cttta---------actttagagagctcttcacttttattggaagaattagttttcttttcatccacttttgatttatggacatgatca 15018525  T
Q  245 tctttccaaaacacataattttcttccacttgttgagaaaatttttcttcattctctttgtttccttcgtaacataaagaaatgttaggcaattgaataa 344  Q
    || ||||||| |||||||||||||||||| |||||||||||  ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  15018526 tcgttccaaatcacataattttcttccacctgttgagaaaaagtttcttcattctctttgtttccttcatgacataaagaaatgttaggcaattgaataa 15018625  T
Q  345 tattagaagaagaatcccaacatttgaaaacacaaaccaacttataagaaggtactaatttaatagtaggtcaaaacttcctaaca 430  Q
    ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| | |||||||||| |||||||||| ||||    
T  15018626 tattagaagaagaatcccaacatttaaaaacacaaaccaacttagaagaaggtactagtgtaatagtaggccaaaacttcccaaca 15018711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 37 - 270
Target Start/End: Complemental strand, 19459294 - 19459062
Alignment:
Q  37 gtgagaatattaggttcccatcatactccccttcttcaagagaattagactttgaatttatagcttgattacctctagtgtcaaaaataaatctatagaa 136  Q
    ||||||||||||| |||||||||||||||||  |||||||| |||| ||| | ||||||||| ||||| |||||   |  ||||||||||||||||||||    
T  19459294 gtgagaatattag-ttcccatcatactcccccacttcaagaaaattcgacctcgaatttatatcttgaataccttcgggatcaaaaataaatctatagaa 19459196  T
Q  137 ttcatcacatggaatttccactttagagaattccactttagaaaactcttcgttttgattggaagaatttgttggattttcctccccttgtgatttgtgg 236  Q
    | ||||||||| |||||||| ||| |||||||| ||||| ||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||| ||    
T  19459195 tgcatcacatgcaatttccatttttgagaattcgacttttgaaaactcttcattttgattggaagaattttttggattttcct-cccttgtgatttgagg 19459097  T
Q  237 agat-atcatctttccaaaacacataattttcttc 270  Q
    | || |||||||||||||| |||||||||||||||    
T  19459096 acataatcatctttccaaagcacataattttcttc 19459062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 287 - 420
Target Start/End: Complemental strand, 19459069 - 19458937
Alignment:
Q  287 ttttcttcattctcttt-gtttccttcgtaacataaagaaatgttaggcaattgaataatattagaagaagaatcccaacatttgaaaacacaaaccaac 385  Q
    ||||||||||||||||| ||||||||| | |||||||||||| |  |||||||||||||||| | ||||| |||||||||||||||||||||||||||||    
T  19459069 ttttcttcattctcttttgtttccttcattacataaagaaattt--ggcaattgaataatataaaaagaaaaatcccaacatttgaaaacacaaaccaac 19458972  T
Q  386 ttataagaaggtactaatttaatagtaggtcaaaa 420  Q
    ||| ||||| ||||||||  ||||||||| |||||    
T  19458971 ttagaagaatgtactaatgcaatagtaggccaaaa 19458937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 167; Significance: 3e-89; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 46 - 430
Target Start/End: Complemental strand, 29951207 - 29950837
Alignment:
Q  46 ttaggttcccatcatactccccttcttcaagagaattagactttgaatttatagcttgattacctctagtgtcaaaaataaatctatagaattcatcaca 145  Q
    ||||| || |||||||||| || |||||||||||||| ||| | ||||||||||||||| ||||||  | ||||||||||||||||| |||| |||||||    
T  29951207 ttaggatcacatcatactctccctcttcaagagaattcgacctcgaatttatagcttgaatacctcctgggtcaaaaataaatctatggaatccatcaca 29951108  T
Q  146 tggaatttccactttagagaattccactttagaaaactcttcgttttgattggaagaatttgttggattttcctccccttgtgatttgtggagat-atca 244  Q
    || ||      |||||         |||||||| | ||||||  ||| |||||||||||| |||   ||||| ||| ||| |||||| |||| || ||||    
T  29951107 tgtaa------cttta---------actttagagagctcttcacttttattggaagaattagttttcttttcatccacttttgatttatggacatgatca 29951023  T
Q  245 tctttccaaaacacataattttcttccacttgttgagaaaatttttcttcattctctttgtttccttcgtaacataaagaaatgttaggcaattgaataa 344  Q
    || ||||||| | ||||||||||||||||||||||||||||  ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  29951022 tcgttccaaatctcataattttcttccacttgttgagaaaaagtttcttcattctctttgtttccttcatgacataaagaaatgttaggcaattgaataa 29950923  T
Q  345 tattagaagaagaatcccaacatttgaaaacacaaaccaacttataagaaggtactaatttaatagtaggtcaaaacttcctaaca 430  Q
    ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||    
T  29950922 tattagaagaagaatcccaacatttaaaaacacaaaccaacttagaagaaggtactaatgtaatagtaggccaaaacttcctaaca 29950837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 152; Significance: 3e-80; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 39 - 424
Target Start/End: Complemental strand, 22299680 - 22299309
Alignment:
Q  39 gagaatattaggttcccatcatactccccttcttcaagagaattagactttgaatttatagcttgattacctctagtgtcaaaaataaatctatagaatt 138  Q
    |||||| ||||| || |||||||||| || |||||||||||||| ||| | ||||||||||||||| ||||||  | |||||||| |||||||| ||||     
T  22299680 gagaattttaggatcacatcatactctccatcttcaagagaattcgacctcgaatttatagcttgaatacctcctgggtcaaaaacaaatctatggaatc 22299581  T
Q  139 catcacatggaatttccactttagagaattccactttagaaaactcttcgttttgattggaagaatttgttggattttcctccccttgtgatttgtggag 238  Q
    ||||||||| ||      |||||         |||||||| | ||| ||  ||| ||||||||||||||||   ||||| ||| ||| |||||| ||||     
T  22299580 catcacatgtaa------cttta---------actttagagagctcatcacttttattggaagaatttgttttcttttcatccacttttgatttatggac 22299496  T
Q  239 at-atcatctttccaaaacacataattttcttccacttgttgagaaaatttttcttcattctctttgtttccttcgtaacataaagaaatgttaggcaat 337  Q
    || |||||| ||||||| | |||||||| ||||||| |||||||||||  ||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  22299495 atgatcatcgttccaaatctcataatttccttccacctgttgagaaaaagtttcttcattctctttgtttccttcatgacataaagaaatgttaggcaat 22299396  T
Q  338 tgaataatattagaagaagaatcccaacatttgaaaacacaaaccaacttataagaaggtactaatttaatagtaggtcaaaacttc 424  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||| |||||||||    
T  22299395 tgaataatattagaagaagaatcccaacatttgaaaacacaaaccaatttagaagaaggtactaatgtaatagtaggccaaaacttc 22299309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 39 - 424
Target Start/End: Original strand, 24806979 - 24807350
Alignment:
Q  39 gagaatattaggttcccatcatactccccttcttcaagagaattagactttgaatttatagcttgattacctctagtgtcaaaaataaatctatagaatt 138  Q
    |||||| ||||| || |||||||||| || |||||||||||||| ||| | ||||||||||||||| ||||||  | |||||||| ||||||||  |||     
T  24806979 gagaattttaggatcacatcatactctccctcttcaagagaattcgacctcgaatttatagcttgaatacctcctgggtcaaaaacaaatctatgaaatc 24807078  T
Q  139 catcacatggaatttccactttagagaattccactttagaaaactcttcgttttgattggaagaatttgttggattttcctccccttgtgatttgtggag 238  Q
    ||||||||| ||      |||||         ||||||||   ||||||  ||| ||||||||||||||||   | ||| ||| ||| |||||| ||||     
T  24807079 catcacatgtaa------cttta---------actttagagggctcttcacttttattggaagaatttgttttctcttcatccacttttgatttatggac 24807163  T
Q  239 at-atcatctttccaaaacacataattttcttccacttgttgagaaaatttttcttcattctctttgtttccttcgtaacataaagaaatgttaggcaat 337  Q
    || |||||| ||||||| | |||||||| ||||||| ||||| |||||  ||||||| ||||||||||||||||| | ||||||||||||||||||||||    
T  24807164 atgatcatcgttccaaatctcataatttccttccacctgttgggaaaaagtttcttcgttctctttgtttccttcatgacataaagaaatgttaggcaat 24807263  T
Q  338 tgaataatattagaagaagaatcccaacatttgaaaacacaaaccaacttataagaaggtactaatttaatagtaggtcaaaacttc 424  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||| |||||||||    
T  24807264 tgaataatattagaagaagaatcccaacatttgaaaacacaaaccaatttagaagaaggtactaatgtaatagtaggccaaaacttc 24807350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 241 - 430
Target Start/End: Original strand, 23732529 - 23732717
Alignment:
Q  241 atcatctttccaaaacacataattttcttccacttgttgagaaaatttttcttcattctctttgtttccttcgtaacataaagaaatgttaggcaattga 340  Q
    ||||| |||||||| |||||||||| ||||||||||||| |||  ||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  23732529 atcatttttccaaagcacataatttccttccacttgttgggaatttttttcttcattctctttgtttccttcatgacataaagaaatgttaggcaattga 23732628  T
Q  341 ataatattagaagaagaatcccaacatttgaaaacacaaaccaacttataagaaggtactaatttaatagtaggtcaaaacttcctaaca 430  Q
    |||||||||||||||||||||||||| |||||||||| || ||||||| |||||||||||||| ||||||||||  ||||||||| ||||    
T  23732629 ataatattagaagaagaatcccaacacttgaaaacactaa-caacttagaagaaggtactaatgtaatagtagggaaaaacttcccaaca 23732717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 39 - 165
Target Start/End: Original strand, 22300590 - 22300716
Alignment:
Q  39 gagaatattaggttcccatcatactccccttcttcaagagaattagactttgaatttatagcttgattacctctagtgtcaaaaataaatctatagaatt 138  Q
    |||||| ||||| || |||||||||| || |||||||||||||| ||| | ||||||||||||||| ||||||  | |||||||| |||||||| ||||     
T  22300590 gagaattttaggatcacatcatactctccctcttcaagagaattcgacctcgaatttatagcttgaatacctcctgggtcaaaaacaaatctatggaatc 22300689  T
Q  139 catcacatggaatttccactttagaga 165  Q
    ||||||||| || ||  ||||||||||    
T  22300690 catcacatgtaactttaactttagaga 22300716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 258 - 308
Target Start/End: Original strand, 44793707 - 44793757
Alignment:
Q  258 cataattttcttccacttgttgagaaaatttttcttcattctctttgtttc 308  Q
    ||||||||||||||||||||||||||||  ||||||||||  |||||||||    
T  44793707 cataattttcttccacttgttgagaaaaaatttcttcattgactttgtttc 44793757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 44793509 - 44793574
Alignment:
Q  46 ttaggttcccatcatactccccttcttcaagagaattagactttgaatttatagcttgattacctc 111  Q
    ||||| || |||||||||| || |||||||||||||| ||| | ||||||||||||||| ||||||    
T  44793509 ttaggatcacatcatactctccctcttcaagagaattcgacctcgaatttatagcttgaatacctc 44793574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 138; Significance: 7e-72; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 39 - 430
Target Start/End: Original strand, 20189491 - 20189868
Alignment:
Q  39 gagaatattaggttcccatcatactccccttcttcaagagaattagactttgaatttatagcttgattacctctagtgtcaaaaataaatctatagaatt 138  Q
    |||||| ||||| || |||||||||| || |||||||||||||| ||| | ||||||||||||||| ||||||  | |||||||| ||||||||||||||    
T  20189491 gagaattttaggatcacatcatactctccctcttcaagagaattcgacctcgaatttatagcttgaatacctcatgggtcaaaaacaaatctatagaatt 20189590  T
Q  139 catcacatggaatttccactttagagaattccactttagaaaactcttcgttttgattggaagaatttgttggattttcctccccttgtgatttgtggag 238  Q
    ||||||||| ||      |||||         |||||||| | ||||||  ||| |||||||||| |||||   ||||| ||| ||| |||  | ||||     
T  20189591 catcacatgtaa------cttta---------actttagagagctcttcacttttattggaagaaattgttttcttttcatccacttttgaagtatggac 20189675  T
Q  239 at-atcatctttccaaaacacataattttcttccacttgttgagaaaatttttcttcattctctttgtttccttcgtaacataaagaaatgttaggcaat 337  Q
    || |||||| ||||||| | |||||||| ||||||| |||||||||||  ||| |||||||||||||||||||||   ||||||||||||||||||||||    
T  20189676 atgatcatcgttccaaatctcataatttccttccacctgttgagaaaaagtttattcattctctttgtttccttcacgacataaagaaatgttaggcaat 20189775  T
Q  338 tgaataatattagaagaagaatcccaacatttgaaaacacaaaccaacttataagaaggtactaatttaatagtaggtcaaaacttcctaaca 430  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||  ||||||||| ||||    
T  20189776 tgaataatattagaagaacaatcccaacatttgaaaacacaaaccaacttagaagaatgtactaatgtaatagtagggaaaaacttcccaaca 20189868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 241 - 430
Target Start/End: Original strand, 22063111 - 22063300
Alignment:
Q  241 atcatctttccaaaacacataattttcttccacttgttgagaaaatttttcttcattctctttgtttccttcgtaacataaagaaatgttaggcaattga 340  Q
    ||||| |||||||| |||||||||| |||| |||||||| |||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  22063111 atcatttttccaaagcacataatttccttcaacttgttgggaaattttttcttcattctctttgtttccttcatgacataaagaaatgttaggcaattga 22063210  T
Q  341 ataatattagaagaagaatcccaacatttgaaaacacaaaccaacttataagaaggtactaatttaatagtaggtcaaaacttcctaaca 430  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||| |||||||||| ||||    
T  22063211 ataatattagaagaagaatcccaacatctgaaaacacaaaccaacttagaagaaggtactaatgtaatagtaggccaaaacttcccaaca 22063300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 121; Significance: 1e-61; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 39 - 424
Target Start/End: Original strand, 40998913 - 40999284
Alignment:
Q  39 gagaatattaggttcccatcatactccccttcttcaagagaattagactttgaatttatagcttgattacctctagtgtcaaaaataaatctatagaatt 138  Q
    |||||| ||||| || |||||||||| || |||||||||||||| ||| | ||||||||||||||| ||||||  | |||||||| |||||||| ||||     
T  40998913 gagaattttaggatcacatcatactctccctcttcaagagaattcgacctcgaatttatagcttgaatacctcctgggtcaaaaacaaatctatggaatc 40999012  T
Q  139 catcacatggaatttccactttagagaattccactttagaaaactcttcgttttgattggaagaatttgttggattttcctccccttgtgatttgtggag 238  Q
    ||||||||| || ||  |||||||||                 ||||||  ||| ||||||||||||||||   | ||| ||| ||| |||||| ||||     
T  40999013 catcacatgtaagtttaactttagaggg---------------ctcttcacttttattggaagaatttgttttctcttcatccacttttgatttatggac 40999097  T
Q  239 at-atcatctttccaaaacacataattttcttccacttgttgagaaaatttttcttcattctctttgtttccttcgtaacataaagaaatgttaggcaat 337  Q
    || |||||| ||| |||   |||||||| ||||||| |||||||||||  ||||||| ||||||||||||||||| |||||||||||||||||| |||||    
T  40999098 atgatcatcgttctaaatttcataatttccttccacctgttgagaaaaagtttcttcgttctctttgtttccttcataacataaagaaatgttaagcaat 40999197  T
Q  338 tgaataatattagaagaagaatcccaacatttgaaaacacaaaccaacttataagaaggtactaatttaatagtaggtcaaaacttc 424  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||| ||||||| | |||||||| |||||||||    
T  40999198 tgaataatattagaagaagaatcccaaaatttgaaaacacaaaccaatttagaagaagctactaatgtcatagtaggccaaaacttc 40999284  T

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Target: scaffold1778 (Bit Score: 93; Significance: 5e-45; HSPs: 1)
Name: scaffold1778
Description:

Target: scaffold1778; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 316 - 424
Target Start/End: Complemental strand, 1366 - 1258
Alignment:
Q  316 acataaagaaatgttaggcaattgaataatattagaagaagaatcccaacatttgaaaacacaaaccaacttataagaaggtactaatttaatagtaggt 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||     
T  1366 acataaagaaatgttaggcaattgaataatattagaagaagaatcccaacatttgaaaacacaaaccaatttagaagaaggtactaatgtaatagtaggc 1267  T
Q  416 caaaacttc 424  Q
    |||||||||    
T  1266 caaaacttc 1258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 370 - 423
Target Start/End: Complemental strand, 16348161 - 16348108
Alignment:
Q  370 gaaaacacaaaccaacttataagaaggtactaatttaatagtaggtcaaaactt 423  Q
    ||||||||||||||| ||| |||||||||||||| |||||||||| ||||||||    
T  16348161 gaaaacacaaaccaatttagaagaaggtactaatgtaatagtaggccaaaactt 16348108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 430
Target Start/End: Complemental strand, 20417096 - 20417018
Alignment:
Q  352 agaagaatcccaacatttgaaaacacaaaccaacttataagaaggtactaatttaatagtaggtcaaaacttcctaaca 430  Q
    |||||||||||||||||| |  ||||| ||||||||  | |||||||||||| |||||||||| |||||| ||| ||||    
T  20417096 agaagaatcccaacatttaactacacataccaactttgatgaaggtactaatgtaatagtaggccaaaacatcccaaca 20417018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 352 - 430
Target Start/End: Original strand, 20416048 - 20416126
Alignment:
Q  352 agaagaatcccaacatttgaaaacacaaaccaacttataagaaggtactaatttaatagtaggtcaaaacttcctaaca 430  Q
    |||||||||||||||||| |  ||||| ||||||||  | ||||||| |||| |||||||||| |||||| ||| ||||    
T  20416048 agaagaatcccaacatttaactacacataccaactttgatgaaggtattaatgtaatagtaggccaaaacatcccaaca 20416126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 17277660 - 17277602
Alignment:
Q  46 ttaggttcccatcatactccccttcttcaagagaattagactttgaatttatagcttga 104  Q
    ||||| || |||||||||| || || ||||||||||| ||| |||||||||||||||||    
T  17277660 ttaggatcacatcatactctccctcctcaagagaattcgaccttgaatttatagcttga 17277602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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