View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8394_low_13 (Length: 339)

Name: NF8394_low_13
Description: NF8394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8394_low_13
NF8394_low_13
[»] chr2 (6 HSPs)
chr2 (47-196)||(36734485-36734634)
chr2 (103-196)||(21915494-21915585)
chr2 (92-196)||(18358047-18358149)
chr2 (92-164)||(25184091-25184161)
chr2 (92-196)||(21081049-21081151)
chr2 (51-90)||(34491280-34491319)
[»] scaffold0035 (2 HSPs)
scaffold0035 (47-196)||(43821-43969)
scaffold0035 (47-192)||(39129-39273)
[»] chr5 (8 HSPs)
chr5 (47-196)||(20313145-20313293)
chr5 (1-121)||(16063628-16063749)
chr5 (1-81)||(6551344-6551425)
chr5 (92-196)||(17011598-17011700)
chr5 (92-196)||(265908-266010)
chr5 (92-196)||(29448710-29448812)
chr5 (160-196)||(21398944-21398980)
chr5 (43-89)||(10774809-10774856)
[»] chr3 (12 HSPs)
chr3 (47-183)||(25202017-25202152)
chr3 (49-196)||(48043514-48043660)
chr3 (10-89)||(13520367-13520446)
chr3 (106-181)||(21845744-21845818)
chr3 (92-196)||(16979782-16979884)
chr3 (92-140)||(22652697-22652745)
chr3 (145-196)||(3160757-3160808)
chr3 (51-90)||(22841319-22841358)
chr3 (51-90)||(45803371-45803410)
chr3 (51-115)||(29907588-29907651)
chr3 (51-115)||(29948754-29948817)
chr3 (51-115)||(29997908-29997971)
[»] scaffold0205 (1 HSPs)
scaffold0205 (47-196)||(5650-5798)
[»] scaffold0086 (3 HSPs)
scaffold0086 (47-196)||(35520-35668)
scaffold0086 (47-90)||(35371-35414)
scaffold0086 (51-90)||(35226-35265)
[»] chr4 (7 HSPs)
chr4 (10-196)||(35660758-35660944)
chr4 (105-181)||(10273271-10273345)
chr4 (92-196)||(10694325-10694427)
chr4 (92-196)||(10908091-10908193)
chr4 (92-164)||(40620434-40620504)
chr4 (145-196)||(26921635-26921686)
chr4 (1-76)||(16296860-16296936)
[»] chr6 (5 HSPs)
chr6 (10-130)||(34140518-34140638)
chr6 (10-130)||(34153134-34153254)
chr6 (92-164)||(15891649-15891719)
chr6 (92-164)||(15900734-15900804)
chr6 (92-164)||(15173533-15173603)
[»] chr8 (9 HSPs)
chr8 (10-90)||(36732476-36732556)
chr8 (92-196)||(25657594-25657696)
chr8 (92-196)||(19880693-19880795)
chr8 (92-196)||(23478952-23479054)
chr8 (107-196)||(16198706-16198793)
chr8 (92-140)||(17159043-17159091)
chr8 (47-196)||(21676627-21676773)
chr8 (92-164)||(26454608-26454680)
chr8 (51-90)||(22483911-22483950)
[»] scaffold0462 (1 HSPs)
scaffold0462 (92-196)||(11093-11195)
[»] scaffold0061 (2 HSPs)
scaffold0061 (51-196)||(14626-14768)
scaffold0061 (51-196)||(23684-23826)
[»] chr7 (6 HSPs)
chr7 (1-77)||(19195532-19195610)
chr7 (101-196)||(16550091-16550184)
chr7 (101-196)||(16615478-16615571)
chr7 (92-196)||(29052262-29052364)
chr7 (92-196)||(32160280-32160382)
chr7 (1-52)||(708483-708535)
[»] scaffold0138 (2 HSPs)
scaffold0138 (92-196)||(20967-21069)
scaffold0138 (92-164)||(34014-34084)
[»] scaffold0034 (1 HSPs)
scaffold0034 (92-196)||(29296-29398)
[»] chr1 (8 HSPs)
chr1 (92-196)||(50001346-50001448)
chr1 (47-115)||(16401861-16401929)
chr1 (92-164)||(29763712-29763782)
chr1 (92-196)||(46197825-46197927)
chr1 (51-90)||(6834149-6834188)
chr1 (145-199)||(21188164-21188218)
chr1 (51-90)||(17901834-17901873)
chr1 (145-192)||(22350543-22350590)
[»] scaffold0676 (1 HSPs)
scaffold0676 (1-77)||(2802-2879)
[»] scaffold0046 (1 HSPs)
scaffold0046 (92-196)||(21857-21959)
[»] scaffold0436 (1 HSPs)
scaffold0436 (107-196)||(8830-8917)
[»] scaffold0057 (1 HSPs)
scaffold0057 (92-193)||(69933-70032)
[»] scaffold0819 (1 HSPs)
scaffold0819 (41-89)||(5226-5275)
[»] scaffold0515 (1 HSPs)
scaffold0515 (92-164)||(4931-5001)
[»] scaffold0306 (1 HSPs)
scaffold0306 (92-164)||(4931-5001)
[»] scaffold0083 (1 HSPs)
scaffold0083 (92-196)||(1807-1909)
[»] scaffold0125 (1 HSPs)
scaffold0125 (132-196)||(28422-28485)
[»] scaffold0058 (2 HSPs)
scaffold0058 (92-140)||(6292-6340)
scaffold0058 (51-196)||(59695-59837)
[»] scaffold0004 (1 HSPs)
scaffold0004 (51-90)||(66112-66151)
[»] scaffold0021 (2 HSPs)
scaffold0021 (101-196)||(16977-17071)
scaffold0021 (101-196)||(26508-26602)
[»] scaffold0594 (1 HSPs)
scaffold0594 (51-90)||(2220-2259)
[»] scaffold0337 (1 HSPs)
scaffold0337 (145-196)||(3075-3126)
[»] scaffold0174 (1 HSPs)
scaffold0174 (51-90)||(11589-11628)
[»] scaffold0261 (1 HSPs)
scaffold0261 (157-189)||(6560-6592)
[»] scaffold0007 (1 HSPs)
scaffold0007 (51-115)||(16459-16522)


Alignment Details
Target: chr2 (Bit Score: 118; Significance: 4e-60; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 47 - 196
Target Start/End: Original strand, 36734485 - 36734634
Alignment:
Q  47 ggtttataattctgaaatagggtttaacatggttgttgttgtttgatttggataattagagaaattaggttttgatttggaattgattgttaaaaaaggt 146  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||| |  |    
T  36734485 ggtttataattctaaaatagggtttaacatggttgttgttgtttgattttgatgattagagaaattagattttgatttggaattgattgttaaaataaat 36734584  T
Q  147 agataattcaatgaattagtgtacaaattgatgttcaggttgtagaataa 196  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  36734585 agataattcaatgaattagtgtacaaattggtgttcaggttgtagaataa 36734634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 196
Target Start/End: Complemental strand, 21915585 - 21915494
Alignment:
Q  103 tagagaaattaggttttgatttggaattgattgttaaaaaaggtagataattcaatgaattagtgtacaaattgatgttcaggttgtagaataa 196  Q
    |||||||||||||||||| ||||||||||||||||||| ||  ||| |||||||||||||||   ||  |||||| ||||||| ||||||||||    
T  21915585 tagagaaattaggttttggtttggaattgattgttaaagaa--taggtaattcaatgaattaacataagaattgaagttcaggctgtagaataa 21915494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 92 - 196
Target Start/End: Original strand, 18358047 - 18358149
Alignment:
Q  92 atttggataattagagaaattaggttttgatttggaattgattgttaaaaaaggtagataattcaatgaattagtgtacaaattgatgttcaggttgtag 191  Q
    |||| ||| |||||||||||||||||||| ||||||||||||||||||| |  |||  |||||||||||||||   ||  |||||| ||||||| |||||    
T  18358047 attttgatgattagagaaattaggttttggtttggaattgattgttaaaga--gtatgtaattcaatgaattaacataagaattgaagttcaggctgtag 18358144  T
Q  192 aataa 196  Q
    |||||    
T  18358145 aataa 18358149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 92 - 164
Target Start/End: Complemental strand, 25184161 - 25184091
Alignment:
Q  92 atttggataattagagaaattaggttttgatttggaattgattgttaaaaaaggtagataattcaatgaatta 164  Q
    |||| ||| |||||||||||||||||||| ||||||||||||||||||| |  |||| |||||||||||||||    
T  25184161 attttgatgattagagaaattaggttttggtttggaattgattgttaaaga--gtaggtaattcaatgaatta 25184091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 196
Target Start/End: Original strand, 21081049 - 21081151
Alignment:
Q  92 atttggataattagagaaattaggttttgatttggaattgattgttaaaaaaggtagataattcaatgaattagtgtacaaattgatgttcaggttgtag 191  Q
    |||| ||| |||||||||||||||||||| ||||||||||||||||||| |  |||| |||  ||||||||||   ||  |||||| ||||||| |||||    
T  21081049 attttgatgattagagaaattaggttttggtttggaattgattgttaaaga--gtaggtaaaacaatgaattaacataagaattgaagttcaggctgtag 21081146  T
Q  192 aataa 196  Q
    |||||    
T  21081147 aataa 21081151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 90
Target Start/End: Original strand, 34491280 - 34491319
Alignment:
Q  51 tataattctgaaatagggtttaacatggttgttgttgttt 90  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  34491280 tataattctgaaaaagggtttaacatggttgttgttgttt 34491319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 114; Significance: 9e-58; HSPs: 2)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 47 - 196
Target Start/End: Original strand, 43821 - 43969
Alignment:
Q  47 ggtttataattctgaaatagggtttaacatggttgttgttgtttgatttggataattagagaaattaggttttgatttggaattgattgttaaaaaaggt 146  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||| ||| ||||||||||||||||||||||||||||||||||||| ||||| ||    
T  43821 ggtttataattctgaaatagggtttaacatggttgttgttattagattttgatgattagagaaattaggttttgatttggaattgattgttgaaaaa-gt 43919  T
Q  147 agataattcaatgaattagtgtacaaattgatgttcaggttgtagaataa 196  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  43920 agataattcaattaattagtgtacaaattgatgtttaggttgtagaataa 43969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 47 - 192
Target Start/End: Original strand, 39129 - 39273
Alignment:
Q  47 ggtttataattctgaaatagggtttaacatggttgttgttgtttgatttggataattagagaaattaggttttgatttggaattgattgttaaaaaaggt 146  Q
    ||||||||||| ||||||| ||| ||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||| ||||| ||    
T  39129 ggtttataattatgaaatacggtgtaacatggttgttgttgtttgattttgatctttagagaaattaggttttgatttggaattgattgttgaaaaa-gt 39227  T
Q  147 agataattcaatgaattagtgtacaaattgatgttcaggttgtaga 192  Q
    ||||||||||||||||||||||||||  | ||||||||||||||||    
T  39228 agataattcaatgaattagtgtacaagataatgttcaggttgtaga 39273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 114; Significance: 9e-58; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 47 - 196
Target Start/End: Complemental strand, 20313293 - 20313145
Alignment:
Q  47 ggtttataattctgaaatagggtttaacatggttgttgttgtttgatttggataattagagaaattaggttttgatttggaattgattgttaaaaaaggt 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||| ||||||| ||    
T  20313293 ggtttataattctgaaatagggtttaacatggttgttgttgtttgattttgatgattagagaaattagattttgatttggaattgattgctaaaaaa-gt 20313195  T
Q  147 agataattcaatgaattagtgtacaaattgatgttcaggttgtagaataa 196  Q
    ||| ||||||||||||||||||||||||||||||||| ||| ||||||||    
T  20313194 agagaattcaatgaattagtgtacaaattgatgttcaagttatagaataa 20313145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 16063749 - 16063628
Alignment:
Q  1 agggtttaac-ttgtagatgtggttggttttgatgttataggaattaggtttataattctgaaatagggtttaacatggttgttgttgtttgatttggat 99  Q
    |||||||||| |||||| ||| ||| ||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||| |||||||||||||| |||    
T  16063749 agggtttaaccttgtagttgttgttagttttgatgttataggaattaggtttataattctggaatagagtttaacgtggtttttgttgtttgattttgat 16063650  T
Q  100 aattagagaaattaggttttga 121  Q
     ||||||||||||||| |||||    
T  16063649 gattagagaaattagggtttga 16063628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 6551344 - 6551425
Alignment:
Q  1 agggtttaac-ttgtagatgtggttggttttgatgttataggaattaggtttataattctgaaatagggtttaacatggttg 81  Q
    |||||||||| |||||| ||| ||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6551344 agggtttaaccttgtagttgttgttagatttgatgttataggaattaggtttataattctggaatagggtttaacatggttg 6551425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 92 - 196
Target Start/End: Complemental strand, 17011700 - 17011598
Alignment:
Q  92 atttggataattagagaaattaggttttgatttggaattgattgttaaaaaaggtagataattcaatgaattagtgtacaaattgatgttcaggttgtag 191  Q
    |||| ||| |||||||||||||||||||| ||||||||||||||||||| |  |||| |||||||||||||||   ||  |||||| ||||||| |||||    
T  17011700 attttgatgattagagaaattaggttttggtttggaattgattgttaaaga--gtaggtaattcaatgaattaacataagaattgaagttcaggctgtag 17011603  T
Q  192 aataa 196  Q
    |||||    
T  17011602 aataa 17011598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 196
Target Start/End: Complemental strand, 266010 - 265908
Alignment:
Q  92 atttggataattagagaaattaggttttgatttggaattgattgttaaaaaaggtagataattcaatgaattagtgtacaaattgatgttcaggttgtag 191  Q
    |||| ||| |||||||||||||||||||| ||||||||||||||||||| |  |||| |||| || |||||||   ||  |||||| ||||||| |||||    
T  266010 attttgatgattagagaaattaggttttggtttggaattgattgttaaaga--gtaggtaatccagtgaattaacataagaattgaagttcaggctgtag 265913  T
Q  192 aataa 196  Q
    |||||    
T  265912 aataa 265908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 196
Target Start/End: Complemental strand, 29448812 - 29448710
Alignment:
Q  92 atttggataattagagaaattaggttttgatttggaattgattgttaaaaaaggtagataattcaatgaattagtgtacaaattgatgttcaggttgtag 191  Q
    |||| ||| |||||||||||||||||||| ||||||||||||||||||| |  |||| |||  ||||||||||   ||  |||||| ||||||| |||||    
T  29448812 attttgatgattagagaaattaggttttggtttggaattgattgttaaaga--gtaggtaaaccaatgaattaacataagaattgaagttcaggctgtag 29448715  T
Q  192 aataa 196  Q
    |||||    
T  29448714 aataa 29448710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 21398944 - 21398980
Alignment:
Q  160 aattagtgtacaaattgatgttcaggttgtagaataa 196  Q
    |||||||||||||||||||||||||||||||||||||    
T  21398944 aattagtgtacaaattgatgttcaggttgtagaataa 21398980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 89
Target Start/End: Original strand, 10774809 - 10774856
Alignment:
Q  43 attaggtt-tataattctgaaatagggtttaacatggttgttgttgtt 89  Q
    |||||||| ||||||||| ||| |||||||||||||||||||||||||    
T  10774809 attaggttgtataattctaaaacagggtttaacatggttgttgttgtt 10774856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 47 - 183
Target Start/End: Complemental strand, 25202152 - 25202017
Alignment:
Q  47 ggtttataattctgaaatagggtttaacatggttgttgttgtttgatttggataattagagaaattaggttttgatttggaattgattgttaaaaaaggt 146  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  25202152 ggtttataaatctgaaatagggtttaacatggttgttgttgtttgattttgatgattagagaaattaggttttgatttggaattgattgtta-aaaaggt 25202054  T
Q  147 agataattcaatgaattagtgtacaaattgatgttca 183  Q
    |||||||||||||||||||||||||| ||||||||||    
T  25202053 agataattcaatgaattagtgtacaatttgatgttca 25202017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 49 - 196
Target Start/End: Original strand, 48043514 - 48043660
Alignment:
Q  49 tttataattctgaaatagggtttaacatggttgttgttgtttgatttggataattagagaaattaggttttgatttggaattgattgttaaaaaaggtag 148  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||| ||||||||||    
T  48043514 tttataattttgaaatagggtttaacatgattgttgttgtttgattttgatgattagagaaattagattttgatttggaattgattgtt-aaaaaggtag 48043612  T
Q  149 ataattcaatgaattagtgtacaaattgatgttcaggttgtagaataa 196  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||    
T  48043613 ataattcaatgaattagtgtacaatttgatgttcaagttgtagaataa 48043660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 13520446 - 13520367
Alignment:
Q  10 cttgtagatgtggttggttttgatgttataggaattaggtttataattctgaaatagggtttaacatggttgttgttgtt 89  Q
    ||||||| ||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13520446 cttgtagttgttgttagttttgatgttataggaattaggtttataattctggaatagggtttaacatggttgttgttgtt 13520367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 106 - 181
Target Start/End: Original strand, 21845744 - 21845818
Alignment:
Q  106 agaaattaggttttgatttggaattgattgttaaaaaaggtagataattcaatgaattagtgtacaaattgatgtt 181  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||    
T  21845744 agaaattaggttttgatttggaattgattgttaaaaaa-gtagataattcaataaattagtgtacaaattcatgtt 21845818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 92 - 196
Target Start/End: Complemental strand, 16979884 - 16979782
Alignment:
Q  92 atttggataattagagaaattaggttttgatttggaattgattgttaaaaaaggtagataattcaatgaattagtgtacaaattgatgttcaggttgtag 191  Q
    |||| ||| |||||||||||||||||||| ||||||||||||||||||| |  |||| |||||||||||||||   ||  |||||| ||||||| |||||    
T  16979884 attttgatgattagagaaattaggttttggtttggaattgattgttaaaga--gtaggtaattcaatgaattaacataagaattgaagttcaggctgtag 16979787  T
Q  192 aataa 196  Q
    |||||    
T  16979786 aataa 16979782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 22652745 - 22652697
Alignment:
Q  92 atttggataattagagaaattaggttttgatttggaattgattgttaaa 140  Q
    |||| ||| |||||||||||||||||||| |||||||||||||||||||    
T  22652745 attttgatgattagagaaattaggttttggtttggaattgattgttaaa 22652697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 196
Target Start/End: Original strand, 3160757 - 3160808
Alignment:
Q  145 gtagataattcaatgaattagtgtacaaattgatgttcaggttgtagaataa 196  Q
    |||| ||||||||||||||| | || ||||||||||| ||||||||||||||    
T  3160757 gtaggtaattcaatgaattaatataaaaattgatgtttaggttgtagaataa 3160808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 90
Target Start/End: Original strand, 22841319 - 22841358
Alignment:
Q  51 tataattctgaaatagggtttaacatggttgttgttgttt 90  Q
    ||||||||||||| ||||||||||||| ||||||||||||    
T  22841319 tataattctgaaaaagggtttaacatgattgttgttgttt 22841358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 90
Target Start/End: Original strand, 45803371 - 45803410
Alignment:
Q  51 tataattctgaaatagggtttaacatggttgttgttgttt 90  Q
    ||||||||||||| |||||||||||| |||||||||||||    
T  45803371 tataattctgaaaaagggtttaacatcgttgttgttgttt 45803410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 29907651 - 29907588
Alignment:
Q  51 tataattctgaaatagggtttaacatggttgttgttgtttgatttggataattagagaaattagg 115  Q
    ||||||||||||| |||||||||| | || ||||||||| | ||| ||| |||||||||||||||    
T  29907651 tataattctgaaaaagggtttaaccttgtagttgttgttaggttt-gatgattagagaaattagg 29907588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 29948817 - 29948754
Alignment:
Q  51 tataattctgaaatagggtttaacatggttgttgttgtttgatttggataattagagaaattagg 115  Q
    ||||||||||||| |||||||||| | || ||||||||| | ||| ||| |||||||||||||||    
T  29948817 tataattctgaaaaagggtttaaccttgtagttgttgttaggttt-gatgattagagaaattagg 29948754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 29997971 - 29997908
Alignment:
Q  51 tataattctgaaatagggtttaacatggttgttgttgtttgatttggataattagagaaattagg 115  Q
    ||||||||||||| |||||||||| | || ||||||||| | ||| ||| |||||||||||||||    
T  29997971 tataattctgaaaaagggtttaaccttgtagttgttgttaggttt-gatgattagagaaattagg 29997908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 47 - 196
Target Start/End: Original strand, 5650 - 5798
Alignment:
Q  47 ggtttataattctgaaatagggtttaacatggttgttgttgtttgatttggataattagagaaattaggttttgatttggaattgattgttaaaaaaggt 146  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |  |||||||||||| |||||  |    
T  5650 ggtttataattctgaaataggatttaacatggttgttgttgtttgattttgatgattagagaaattaggttttgaatcagaattgattgttgaaaaa-ct 5748  T
Q  147 agataattcaatgaattagtgtacaaattgatgttcaggttgtagaataa 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5749 agataattcaatgaattagtgtacaaattgatgttcaggttgtagaataa 5798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 108; Significance: 3e-54; HSPs: 3)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 47 - 196
Target Start/End: Original strand, 35520 - 35668
Alignment:
Q  47 ggtttataattctgaaatagggtttaacatggttgttgttgtttgatttggataattagagaaattaggttttgatttggaa-ttgattgttaaaaaagg 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||| ||| ||||||||||||||  |    
T  35520 ggtttataattctgaaatagggtttaacatggttgttgttgtttgattttgatggttagagaaattaggttttgatttagaatttgattgttaaaaa--g 35617  T
Q  146 tagataattcaatgaattagtgtacaaattgatgttcaggttgtagaataa 196  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  35618 tagataattcaatgaattagtgtacaaattgttattcaggttgtagaataa 35668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 47 - 90
Target Start/End: Original strand, 35371 - 35414
Alignment:
Q  47 ggtttataattctgaaatagggtttaacatggttgttgttgttt 90  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  35371 ggtttataattctgaaatagggtttaacatggttgttgttgttt 35414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 90
Target Start/End: Original strand, 35226 - 35265
Alignment:
Q  51 tataattctgaaatagggtttaacatggttgttgttgttt 90  Q
    ||||||||| ||| ||||||||||||||||||||||||||    
T  35226 tataattctaaaaaagggtttaacatggttgttgttgttt 35265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 7e-40; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 10 - 196
Target Start/End: Complemental strand, 35660944 - 35660758
Alignment:
Q  10 cttgtagatgtggttggttttgatgttataggaattaggtttataattctgaaatagggtttaacatggttgttgttgtttgatttggataattagagaa 109  Q
    ||||||| ||| ||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||    
T  35660944 cttgtagttgttgttagttttgatgttatatgaattaggtttataattctggaatagggtttaacatggttgttgttgtttgattttgatgattagagaa 35660845  T
Q  110 attaggttttg-atttggaattgattgttaaaaaaggtagataattcaatgaattagtgtacaaattgatgttcaggttgtagaataa 196  Q
    |||||| |||| ||||  ||||||||||| | | | |||| |||| | ||||| ||  |||  ||||| |||||||||||||||||||    
T  35660844 attagggtttgaatttaaaattgattgttgagaga-gtaggtaatccgatgaagtaaggtaataattggtgttcaggttgtagaataa 35660758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 105 - 181
Target Start/End: Complemental strand, 10273345 - 10273271
Alignment:
Q  105 gagaaattaggttttgatttggaattgattgttaaaaaaggtagataattcaatgaattagtgtacaaattgatgtt 181  Q
    ||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||| |||||    
T  10273345 gagaaattaggttttgatttggaat-gattgttaaaaaag-taaataattcaatgaattagtgtacaaattaatgtt 10273271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 92 - 196
Target Start/End: Original strand, 10694325 - 10694427
Alignment:
Q  92 atttggataattagagaaattaggttttgatttggaattgattgttaaaaaaggtagataattcaatgaattagtgtacaaattgatgttcaggttgtag 191  Q
    |||| ||| |||||||||||||||||||| ||||||||||||||||||| |  |||| |||| ||||||||||   ||  |||||| ||||||| |||||    
T  10694325 attttgatgattagagaaattaggttttggtttggaattgattgttaaaga--gtaggtaatccaatgaattaacataagaattgaagttcaggctgtag 10694422  T
Q  192 aataa 196  Q
    |||||    
T  10694423 aataa 10694427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 92 - 196
Target Start/End: Original strand, 10908091 - 10908193
Alignment:
Q  92 atttggataattagagaaattaggttttgatttggaattgattgttaaaaaaggtagataattcaatgaattagtgtacaaattgatgttcaggttgtag 191  Q
    |||| ||| |||||||||||||||||||| ||||||||||||||||||| |  |||| ||||||||| |||||   ||  |||||| ||||||| |||||    
T  10908091 attttgatgattagagaaattaggttttggtttggaattgattgttaaaga--gtaggtaattcaattaattaacataagaattgaagttcaggctgtag 10908188  T
Q  192 aataa 196  Q
    |||||    
T  10908189 aataa 10908193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 92 - 164
Target Start/End: Complemental strand, 40620504 - 40620434
Alignment:
Q  92 atttggataattagagaaattaggttttgatttggaattgattgttaaaaaaggtagataattcaatgaatta 164  Q
    |||| ||| |||||||||||||||||||| ||||||||||||||||||| |  |||| |||||||||||||||    
T  40620504 attttgatgattagagaaattaggttttggtttggaattgattgttaaaga--gtaggtaattcaatgaatta 40620434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 196
Target Start/End: Original strand, 26921635 - 26921686
Alignment:
Q  145 gtagataattcaatgaattagtgtacaaattgatgttcaggttgtagaataa 196  Q
    |||| |||| ||||||||| ||||||||||||||||||| ||||||||||||    
T  26921635 gtaggtaatccaatgaatttgtgtacaaattgatgttcatgttgtagaataa 26921686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 16296936 - 16296860
Alignment:
Q  1 agggtttaacttg-tagatgtggttggttttgatgttataggaattaggtttataattctgaaatagggtttaacat 76  Q
    |||||||||| || ||| ||| ||| |||||||||||||| |||||| |||| ||||||| |||  |||||||||||    
T  16296936 agggtttaacctggtagttgttgttagttttgatgttatatgaattatgtttttaattctaaaaaggggtttaacat 16296860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 4e-38; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 10 - 130
Target Start/End: Original strand, 34140518 - 34140638
Alignment:
Q  10 cttgtagatgtggttggttttgatgttataggaattaggtttataattctgaaatagggtttaacatggttgttgttgtttgatttggataattagagaa 109  Q
    ||||||| ||| ||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||    
T  34140518 cttgtagttgttgttagttttgatgttataggaattaagtttataattctggaatagggtttaacatggttgttgttgtttgattttgatgattagagaa 34140617  T
Q  110 attaggttttgatttggaatt 130  Q
    |||||| ||||| ||| ||||    
T  34140618 attagggtttgaattgcaatt 34140638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 10 - 130
Target Start/End: Original strand, 34153134 - 34153254
Alignment:
Q  10 cttgtagatgtggttggttttgatgttataggaattaggtttataattctgaaatagggtttaacatggttgttgttgtttgatttggataattagagaa 109  Q
    ||||||| ||| ||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||    
T  34153134 cttgtagttgttgttagttttgatgttataggaattaagtttataattctggaatagggtttaacatggttgttgttgtttgattttgatgattagagaa 34153233  T
Q  110 attaggttttgatttggaatt 130  Q
    |||||| ||||| ||| ||||    
T  34153234 attagggtttgaattgcaatt 34153254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 92 - 164
Target Start/End: Original strand, 15891649 - 15891719
Alignment:
Q  92 atttggataattagagaaattaggttttgatttggaattgattgttaaaaaaggtagataattcaatgaatta 164  Q
    |||| ||| |||||||||||||||||||| ||||||||||||||||||| |  |||| |||||||||||||||    
T  15891649 attttgatgattagagaaattaggttttggtttggaattgattgttaaaga--gtaggtaattcaatgaatta 15891719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 92 - 164
Target Start/End: Original strand, 15900734 - 15900804
Alignment:
Q  92 atttggataattagagaaattaggttttgatttggaattgattgttaaaaaaggtagataattcaatgaatta 164  Q
    |||| ||| |||||||||||||||||||| ||||||||||||||||||| |  |||| |||||||||||||||    
T  15900734 attttgatgattagagaaattaggttttggtttggaattgattgttaaaga--gtaggtaattcaatgaatta 15900804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 164
Target Start/End: Original strand, 15173533 - 15173603
Alignment:
Q  92 atttggataattagagaaattaggttttgatttggaattgattgttaaaaaaggtagataattcaatgaatta 164  Q
    |||| ||| |||| ||||||||||||||| ||||||||||||||||||| ||  ||| |||||||||||||||    
T  15173533 attttgatgattaaagaaattaggttttggtttggaattgattgttaaagaa--taggtaattcaatgaatta 15173603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 36732476 - 36732556
Alignment:
Q  10 cttgtagatgtggttggttttgatgttataggaattaggtttataattctgaaatagggtttaacatggttgttgttgttt 90  Q
    ||||||| ||| ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  36732476 cttgtagttgttgttagttttgatgttataggaattaggtttataattctaaaaaagggtttaacatggttgttgttgttt 36732556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 92 - 196
Target Start/End: Original strand, 25657594 - 25657696
Alignment:
Q  92 atttggataattagagaaattaggttttgatttggaattgattgttaaaaaaggtagataattcaatgaattagtgtacaaattgatgttcaggttgtag 191  Q
    |||| ||| |||||||||||||||||||| |||| |||||||||||||| |  |||| |||||||||||||||   ||  |||||||||||||| |||||    
T  25657594 attttgatgattagagaaattaggttttggtttgaaattgattgttaaaga--gtaggtaattcaatgaattaacataagaattgatgttcaggctgtag 25657691  T
Q  192 aataa 196  Q
    |||||    
T  25657692 aataa 25657696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 92 - 196
Target Start/End: Complemental strand, 19880795 - 19880693
Alignment:
Q  92 atttggataattagagaaattaggttttgatttggaattgattgttaaaaaaggtagataattcaatgaattagtgtacaaattgatgttcaggttgtag 191  Q
    |||| ||| |||||||||||||||||||| ||||||||||||||||||| |  |||| ||||| |||||||||   ||  |||||| ||||||| |||||    
T  19880795 attttgatgattagagaaattaggttttgttttggaattgattgttaaaga--gtaggtaattaaatgaattaacataagaattgaagttcaggctgtag 19880698  T
Q  192 aataa 196  Q
    |||||    
T  19880697 aataa 19880693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 92 - 196
Target Start/End: Complemental strand, 23479054 - 23478952
Alignment:
Q  92 atttggataattagagaaattaggttttgatttggaattgattgttaaaaaaggtagataattcaatgaattagtgtacaaattgatgttcaggttgtag 191  Q
    |||| ||| |||||||||||||||||||| ||||||| ||||||||||| |  |||| |||||||||||||||   ||  |||||| ||||||| |||||    
T  23479054 attttgatgattagagaaattaggttttggtttggaagtgattgttaaaga--gtaggtaattcaatgaattaacataagaattgaagttcaggctgtag 23478957  T
Q  192 aataa 196  Q
    |||||    
T  23478956 aataa 23478952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 107 - 196
Target Start/End: Complemental strand, 16198793 - 16198706
Alignment:
Q  107 gaaattaggttttgatttggaattgattgttaaaaaaggtagataattcaatgaattagtgtacaaattgatgttcaggttgtagaataa 196  Q
    |||||||||||||| ||||||||||||||||||| |  |||| |||||||||||||||   ||  |||||| ||||||| ||||||||||    
T  16198793 gaaattaggttttggtttggaattgattgttaaaga--gtaggtaattcaatgaattaacataagaattgaagttcaggctgtagaataa 16198706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 17159043 - 17159091
Alignment:
Q  92 atttggataattagagaaattaggttttgatttggaattgattgttaaa 140  Q
    |||| ||| |||||||||||||||||||| |||||||||||||||||||    
T  17159043 attttgatgattagagaaattaggttttggtttggaattgattgttaaa 17159091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 47 - 196
Target Start/End: Original strand, 21676627 - 21676773
Alignment:
Q  47 ggtttataattctgaaatagggtttaacatggttgttgttgtttgatttggataattagagaaattaggttttgatttggaattgattgttaaaaaaggt 146  Q
    ||||||||||| |||||||||||||||| | || ||||||| | | |||| ||| ||| |||||||||||||  ||||  | | ||  ||| ||| || |    
T  21676627 ggtttataattatgaaatagggtttaactttgtagttgttgatagttttg-ata-ttatagaaattaggtttaaatttcaattggaaggttgaaagag-t 21676723  T
Q  147 agataattcaatgaattagtgtacaaattgatgttcaggttgtagaataa 196  Q
    || |||| |||||||||| | || ||||||||||||||||||||||||||    
T  21676724 aggtaatccaatgaattaatataaaaattgatgttcaggttgtagaataa 21676773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 164
Target Start/End: Complemental strand, 26454680 - 26454608
Alignment:
Q  92 atttggataattagagaaat--taggttttgatttggaattgattgttaaaaaaggtagataattcaatgaatta 164  Q
    |||| ||| |||||||||||  ||||||||| ||||||||||||||||||| |  |||| |||||||||||||||    
T  26454680 attttgattattagagaaatattaggttttggtttggaattgattgttaaaga--gtaggtaattcaatgaatta 26454608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 90
Target Start/End: Complemental strand, 22483950 - 22483911
Alignment:
Q  51 tataattctgaaatagggtttaacatggttgttgttgttt 90  Q
    ||||||||| ||| ||||||||||||||||||||||||||    
T  22483950 tataattcttaaaaagggtttaacatggttgttgttgttt 22483911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0462 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0462
Description:

Target: scaffold0462; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 92 - 196
Target Start/End: Complemental strand, 11195 - 11093
Alignment:
Q  92 atttggataattagagaaattaggttttgatttggaattgattgttaaaaaaggtagataattcaatgaattagtgtacaaattgatgttcaggttgtag 191  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||| |  |||| |||||||||||||||   ||  |||||| ||||||| |||||    
T  11195 attttgatgattagagaaattaggttttgatttggaattgattgttaaaga--gtaggtaattcaatgaattaacataagaattgaagttcaggctgtag 11098  T
Q  192 aataa 196  Q
    |||||    
T  11097 aataa 11093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 51 - 196
Target Start/End: Original strand, 14626 - 14768
Alignment:
Q  51 tataattctgaaatagggtttaacatggttgttgttgtttgatttggataattagagaaattaggttttgatttggaattgattgttaaaaaaggtagat 150  Q
    ||||||||||||| |||||||||  | || ||||||||| | |||| || |||||||||||||||||||| ||||||||||||||||||| |  |||| |    
T  14626 tataattctgaaaaagggtttaaatttgtagttgttgttagttttg-atgattagagaaattaggttttggtttggaattgattgttaaaga--gtaggt 14722  T
Q  151 aattcaatgaattagtgtacaaattgatgttcaggttgtagaataa 196  Q
    |||  ||| |||||   ||  |||||| ||||||||||||||||||    
T  14723 aatctaataaattaacataagaattgaagttcaggttgtagaataa 14768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 51 - 196
Target Start/End: Original strand, 23684 - 23826
Alignment:
Q  51 tataattctgaaatagggtttaacatggttgttgttgtttgatttggataattagagaaattaggttttgatttggaattgattgttaaaaaaggtagat 150  Q
    ||||||||||||| |||||||||  | || ||||||||| | |||| || |||||||||||||||||||| ||||||||||||||||||| |  |||| |    
T  23684 tataattctgaaaaagggtttaaatttgtagttgttgttagttttg-atgattagagaaattaggttttggtttggaattgattgttaaaga--gtaggt 23780  T
Q  151 aattcaatgaattagtgtacaaattgatgttcaggttgtagaataa 196  Q
    |||  ||| |||||   ||  |||||| ||||||||||||||||||    
T  23781 aatctaataaattaacataagaattgaagttcaggttgtagaataa 23826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 19195610 - 19195532
Alignment:
Q  1 agggtttaac-ttgtagatgtggttggttttgatgttataggaattaggtttataattctgaaata-gggtttaacatg 77  Q
    |||||||||| |||||| ||| ||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  19195610 agggtttaaccttgtagttgttgttagttttgatgttataggaattaggtttataattctggaataggggtttaacatg 19195532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 196
Target Start/End: Original strand, 16550091 - 16550184
Alignment:
Q  101 attagagaaattaggttttgatttggaattgattgttaaaaaaggtagataattcaatgaattagtgtacaaattgatgttcaggttgtagaataa 196  Q
    |||||||||||||||||||| ||||||||||||||||||| |  |||| |||||||||||||||   ||  |||||| ||||||| ||||||||||    
T  16550091 attagagaaattaggttttggtttggaattgattgttaaaga--gtaggtaattcaatgaattaacataagaattgaagttcaggctgtagaataa 16550184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 196
Target Start/End: Complemental strand, 16615571 - 16615478
Alignment:
Q  101 attagagaaattaggttttgatttggaattgattgttaaaaaaggtagataattcaatgaattagtgtacaaattgatgttcaggttgtagaataa 196  Q
    |||||||||||||||||||| ||||||||||||||||||| |  |||| |||||||||||||||   ||  |||||| ||||||| ||||||||||    
T  16615571 attagagaaattaggttttggtttggaattgattgttaaaga--gtaggtaattcaatgaattaacataagaattgaagttcaggctgtagaataa 16615478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 92 - 196
Target Start/End: Original strand, 29052262 - 29052364
Alignment:
Q  92 atttggataattagagaaattaggttttgatttggaattgattgttaaaaaaggtagataattcaatgaattagtgtacaaattgatgttcaggttgtag 191  Q
    |||| ||| |||||||||||||||||||| ||||||||||||||||||| |  |||| ||||||||| |||||   ||  |||||| ||||||| |||||    
T  29052262 attttgatgattagagaaattaggttttggtttggaattgattgttaaaga--gtaggtaattcaattaattaacataagaattgaagttcaggctgtag 29052359  T
Q  192 aataa 196  Q
    |||||    
T  29052360 aataa 29052364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 92 - 196
Target Start/End: Original strand, 32160280 - 32160382
Alignment:
Q  92 atttggataattagagaaattaggttttgatttggaattgattgttaaaaaaggtagataattcaatgaattagtgtacaaattgatgttcaggttgtag 191  Q
    |||| ||| |||||||||||||||||||| ||||||||||||||||||| |  |||| |||| ||||||||||   ||  |||||| ||||||| |||||    
T  32160280 attttgatgattagagaaattaggttttggtttggaattgattgttaaaga--gtaggtaatccaatgaattaacataagaattgaagttcaggctgtag 32160377  T
Q  192 aataa 196  Q
    |||||    
T  32160378 aataa 32160382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 708483 - 708535
Alignment:
Q  1 agggtttaac-ttgtagatgtggttggttttgatgttataggaattaggttta 52  Q
    |||||||||| |||||| ||  ||| |||||||||||||||||||||||||||    
T  708483 agggtttaaccttgtagttgctgttagttttgatgttataggaattaggttta 708535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 92 - 196
Target Start/End: Complemental strand, 21069 - 20967
Alignment:
Q  92 atttggataattagagaaattaggttttgatttggaattgattgttaaaaaaggtagataattcaatgaattagtgtacaaattgatgttcaggttgtag 191  Q
    |||| ||| |||||||||||||||||||| ||||||||||||||||||| |  |||| |||||||||||||||   ||  |||||| ||||||| |||||    
T  21069 attttgatgattagagaaattaggttttggtttggaattgattgttaaaga--gtaggtaattcaatgaattaacataagaattgaagttcaggctgtag 20972  T
Q  192 aataa 196  Q
    |||||    
T  20971 aataa 20967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 92 - 164
Target Start/End: Complemental strand, 34084 - 34014
Alignment:
Q  92 atttggataattagagaaattaggttttgatttggaattgattgttaaaaaaggtagataattcaatgaatta 164  Q
    |||| ||| |||||||||||||||||||| ||||||||||||||||||| |  |||| |||||||||||||||    
T  34084 attttgatgattagagaaattaggttttggtttggaattgattgttaaaca--gtaggtaattcaatgaatta 34014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 92 - 196
Target Start/End: Original strand, 29296 - 29398
Alignment:
Q  92 atttggataattagagaaattaggttttgatttggaattgattgttaaaaaaggtagataattcaatgaattagtgtacaaattgatgttcaggttgtag 191  Q
    |||| ||| |||||||||||||||||||| ||||||||||||||||||| |  |||| |||||||||||||||   ||  |||||| ||||||| |||||    
T  29296 attttgatgattagagaaattaggttttggtttggaattgattgttaaaga--gtaggtaattcaatgaattaacataagaattgaagttcaggctgtag 29393  T
Q  192 aataa 196  Q
    |||||    
T  29394 aataa 29398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 92 - 196
Target Start/End: Complemental strand, 50001448 - 50001346
Alignment:
Q  92 atttggataattagagaaattaggttttgatttggaattgattgttaaaaaaggtagataattcaatgaattagtgtacaaattgatgttcaggttgtag 191  Q
    |||| ||| |||||||||||||||||||| ||||||||||||||||||| |  |||| |||||||||||||||   ||  |||||| ||||||| |||||    
T  50001448 attttgatgattagagaaattaggttttggtttggaattgattgttaaaga--gtaggtaattcaatgaattaacataagaattgaagttcaggctgtag 50001351  T
Q  192 aataa 196  Q
    |||||    
T  50001350 aataa 50001346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 16401929 - 16401861
Alignment:
Q  47 ggtttataattctgaaatagggtttaacatggttgttgttgtttgatttggataattagagaaattagg 115  Q
    ||||||||||||||||||||||||||||||| |||||||| ||| |||| ||| ||||||||| |||||    
T  16401929 ggtttataattctgaaatagggtttaacatgtttgttgttattttattttgatgattagagaagttagg 16401861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 164
Target Start/End: Original strand, 29763712 - 29763782
Alignment:
Q  92 atttggataattagagaaattaggttttgatttggaattgattgttaaaaaaggtagataattcaatgaatta 164  Q
    |||| ||| |||||||||||||||||||| ||||||||||||||||||| |  |||| |||| ||||||||||    
T  29763712 attttgatgattagagaaattaggttttggtttggaattgattgttaaaga--gtaggtaatacaatgaatta 29763782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 196
Target Start/End: Original strand, 46197825 - 46197927
Alignment:
Q  92 atttggataattagagaaattaggttttgatttggaattgattgttaaaaaaggtagataattcaatgaattagtgtacaaattgatgttcaggttgtag 191  Q
    |||| ||| ||||||||||||| |||||| ||||||||||||||||||| |  |||| |||| ||||||||||   ||  |||||| ||||||| |||||    
T  46197825 attttgatgattagagaaattatgttttggtttggaattgattgttaaaga--gtaggtaatccaatgaattaacataagaattgaagttcaggctgtag 46197922  T
Q  192 aataa 196  Q
    |||||    
T  46197923 aataa 46197927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 90
Target Start/End: Complemental strand, 6834188 - 6834149
Alignment:
Q  51 tataattctgaaatagggtttaacatggttgttgttgttt 90  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  6834188 tataattctgaaaaagggtttaacatggttgttgttgttt 6834149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 21188164 - 21188218
Alignment:
Q  145 gtagataattcaatgaattagtgtacaaattgatgttcaggttgtagaataagaa 199  Q
    |||| |||| |||||||||| | || |||||||||||||||||||||||||||||    
T  21188164 gtaggtaatccaatgaattaatataaaaattgatgttcaggttgtagaataagaa 21188218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 90
Target Start/End: Original strand, 17901834 - 17901873
Alignment:
Q  51 tataattctgaaatagggtttaacatggttgttgttgttt 90  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  17901834 tataattctgaaaaagggtttaacatggttgtttttgttt 17901873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 192
Target Start/End: Complemental strand, 22350590 - 22350543
Alignment:
Q  145 gtagataattcaatgaattagtgtacaaattgatgttcaggttgtaga 192  Q
    |||| ||||||||||||||| | || ||||||||||||||||||||||    
T  22350590 gtaggtaattcaatgaattaatataaaaattgatgttcaggttgtaga 22350543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0676 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0676
Description:

Target: scaffold0676; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 2879 - 2802
Alignment:
Q  1 agggtttaac-ttgtagatgtggttggttttgatgttataggaattaggtttataattctgaaatagggtttaacatg 77  Q
    |||||||||| |||||| ||| ||| |||| ||||||||||||||||||||||||||||| |||  ||||||||||||    
T  2879 agggtttaaccttgtagttgttgttagtttcgatgttataggaattaggtttataattctaaaaaggggtttaacatg 2802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 92 - 196
Target Start/End: Original strand, 21857 - 21959
Alignment:
Q  92 atttggataattagagaaattaggttttgatttggaattgattgttaaaaaaggtagataattcaatgaattagtgtacaaattgatgttcaggttgtag 191  Q
    |||| ||| |||||||||||||||||||| |||| || ||||||||||| |  |||| |||||||||||||||   ||  |||||||||||||| |||||    
T  21857 attttgatgattagagaaattaggttttggtttgaaaatgattgttaaaga--gtaggtaattcaatgaattaacataagaattgatgttcaggctgtag 21954  T
Q  192 aataa 196  Q
    |||||    
T  21955 aataa 21959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0436 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0436
Description:

Target: scaffold0436; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 107 - 196
Target Start/End: Complemental strand, 8917 - 8830
Alignment:
Q  107 gaaattaggttttgatttggaattgattgttaaaaaaggtagataattcaatgaattagtgtacaaattgatgttcaggttgtagaataa 196  Q
    |||||||||||||| ||||||||||||||||||| |  |||| |||||||||||||||   ||  |||||| ||||||| ||||||||||    
T  8917 gaaattaggttttggtttggaattgattgttaaaga--gtaggtaattcaatgaattaacataagaattgaagttcaggctgtagaataa 8830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 92 - 193
Target Start/End: Original strand, 69933 - 70032
Alignment:
Q  92 atttggataattagagaaattaggttttgatttggaattgattgttaaaaaaggtagataattcaatgaattagtgtacaaattgatgttcaggttgtag 191  Q
    |||| ||| |||||||||||||||||||| ||||||||||||||||||| |  |||| |||| ||||||||||   ||  |||||| ||||||| |||||    
T  69933 attttgatgattagagaaattaggttttggtttggaattgattgttaaaga--gtaggtaatccaatgaattaacataagaattgaagttcaggctgtag 70030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0819 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0819
Description:

Target: scaffold0819; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 5275 - 5226
Alignment:
Q  41 gaattaggtt-tataattctgaaatagggtttaacatggttgttgttgtt 89  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  5275 gaattaggttgtataattctgaaacagggtttaacatggttgttgttgtt 5226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 164
Target Start/End: Complemental strand, 5001 - 4931
Alignment:
Q  92 atttggataattagagaaattaggttttgatttggaattgattgttaaaaaaggtagataattcaatgaatta 164  Q
    |||| ||| |||||||||||||||||||| ||||||||||||||||||| |  |||| |||| ||||||||||    
T  5001 attttgatgattagagaaattaggttttggtttggaattgattgttaaaga--gtaggtaatccaatgaatta 4931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 164
Target Start/End: Complemental strand, 5001 - 4931
Alignment:
Q  92 atttggataattagagaaattaggttttgatttggaattgattgttaaaaaaggtagataattcaatgaatta 164  Q
    |||| ||| |||||||||||||||||||| ||||||||||||||||||| |  |||| |||| ||||||||||    
T  5001 attttgatgattagagaaattaggttttggtttggaattgattgttaaaga--gtaggtaatccaatgaatta 4931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 196
Target Start/End: Complemental strand, 1909 - 1807
Alignment:
Q  92 atttggataattagagaaattaggttttgatttggaattgattgttaaaaaaggtagataattcaatgaattagtgtacaaattgatgttcaggttgtag 191  Q
    |||| ||| |||||||||||||  ||||| ||||||||||||||||||| |  |||| |||||||||||||||   ||  |||||| ||||||| |||||    
T  1909 attttgatgattagagaaattattttttggtttggaattgattgttaaaga--gtaggtaattcaatgaattaacataagaattgaagttcaggctgtag 1812  T
Q  192 aataa 196  Q
    |||||    
T  1811 aataa 1807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 132 - 196
Target Start/End: Complemental strand, 28485 - 28422
Alignment:
Q  132 attgttaaaaaaggtagataattcaatgaattagtgtacaaattgatgttcaggttgtagaataa 196  Q
    |||||||||| || ||| |||| |||| |||||||||||||||||||| ||||||||||||||||    
T  28485 attgttaaaagag-taggtaatccaattaattagtgtacaaattgatggtcaggttgtagaataa 28422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 6340 - 6292
Alignment:
Q  92 atttggataattagagaaattaggttttgatttggaattgattgttaaa 140  Q
    |||| ||| |||||||||||||||||||| |||||||||||||||||||    
T  6340 attttgatgattagagaaattaggttttggtttggaattgattgttaaa 6292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 196
Target Start/End: Original strand, 59695 - 59837
Alignment:
Q  51 tataattctgaaatagggtttaacatggttgttgttgtttgatttggataattagagaaattaggttttgatttggaattgattgttaaaaaaggtagat 150  Q
    ||||||||||||| |||||||||| | || ||||||| | | |||| ||| ||| |||||||||||||  |||   | ||||||||| ||| || ||| |    
T  59695 tataattctgaaaaagggtttaactttgtagttgttgatagttttg-ata-ttatagaaattaggtttatattgcaatttgattgttgaaatag-taggt 59791  T
Q  151 aattcaatgaattagtgtacaaattgatgttcaggttgtagaataa 196  Q
    ||| |||||||||| | || ||||||||||| ||||||||||||||    
T  59792 aatccaatgaattaatataaaaattgatgtttaggttgtagaataa 59837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 90
Target Start/End: Original strand, 66112 - 66151
Alignment:
Q  51 tataattctgaaatagggtttaacatggttgttgttgttt 90  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  66112 tataattctgaaaaagggtttaacatggttgttgttgttt 66151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 196
Target Start/End: Complemental strand, 17071 - 16977
Alignment:
Q  101 attagagaaattaggttttgatttggaatt-gattgttaaaaaaggtagataattcaatgaattagtgtacaaattgatgttcaggttgtagaataa 196  Q
    |||| |||||||||||||  ||||| |||| ||||||| ||| || ||| |||| |||||||||| | || ||||||||||||||||||||||||||    
T  17071 attatagaaattaggttta-atttgcaatttgattgttgaaagag-taggtaatccaatgaattaatataaaaattgatgttcaggttgtagaataa 16977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 196
Target Start/End: Complemental strand, 26602 - 26508
Alignment:
Q  101 attagagaaattaggttttgatttggaatt-gattgttaaaaaaggtagataattcaatgaattagtgtacaaattgatgttcaggttgtagaataa 196  Q
    |||| |||||||||||||  ||||| |||| ||||||| ||| || ||| |||| |||||||||| | || ||||||||||||||||||||||||||    
T  26602 attatagaaattaggttta-atttgcaatttgattgttgaaagag-taggtaatccaatgaattaatataaaaattgatgttcaggttgtagaataa 26508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 90
Target Start/End: Complemental strand, 2259 - 2220
Alignment:
Q  51 tataattctgaaatagggtttaacatggttgttgttgttt 90  Q
    ||||||||||||| |||||||||||| |||||||||||||    
T  2259 tataattctgaaaaagggtttaacatagttgttgttgttt 2220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 196
Target Start/End: Complemental strand, 3126 - 3075
Alignment:
Q  145 gtagataattcaatgaattagtgtacaaattgatgttcaggttgtagaataa 196  Q
    |||| ||||||||||||||||| || |||||||||||| |||| ||||||||    
T  3126 gtaggtaattcaatgaattagtataaaaattgatgttctggttttagaataa 3075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 90
Target Start/End: Complemental strand, 11628 - 11589
Alignment:
Q  51 tataattctgaaatagggtttaacatggttgttgttgttt 90  Q
    ||||||||||||| |||||||||||| |||||||||||||    
T  11628 tataattctgaaaaagggtttaacatcgttgttgttgttt 11589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 189
Target Start/End: Original strand, 6560 - 6592
Alignment:
Q  157 atgaattagtgtacaaattgatgttcaggttgt 189  Q
    ||||||||||||||||||||||||| |||||||    
T  6560 atgaattagtgtacaaattgatgttaaggttgt 6592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 16459 - 16522
Alignment:
Q  51 tataattctgaaatagggtttaacatggttgttgttgtttgatttggataattagagaaattagg 115  Q
    ||||||||||||| |||||||||| | || ||||||||| | ||| ||| |||||||||||||||    
T  16459 tataattctgaaaaagggtttaaccttgtagttgttgttaggttt-gatgattagagaaattagg 16522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University