View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8394_low_16 (Length: 303)
Name: NF8394_low_16
Description: NF8394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8394_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 22 - 284
Target Start/End: Complemental strand, 38541523 - 38541260
Alignment:
| Q |
22 |
tttcgtgttaaaataaagtgttaagagctcaaactatcgattttgaaaagnnnnnnn-gaaagagagcttgatacattatgtgtgatcgatggttcttgt |
120 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38541523 |
tttcatgttaaaataaagtgttaagagctcaaactatcgattttaaaaagaaaaaaaagaaagagagcttgatacattatctgtgatcgatggttcttgt |
38541424 |
T |
|
| Q |
121 |
aataattgagtatcaaaataaagttgtttatcacctttatttaattagtttattgcaatgatatgtttatcctttttatcatgaaaattgtcacatttct |
220 |
Q |
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||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
38541423 |
aataattgagtattaaaataatgttgtttatcacctttatttaattagtttattgcaatgatatgtttatcctttttatcatgaaaattgtcacattttt |
38541324 |
T |
|
| Q |
221 |
cgacatagtaaattctaaatttctgcacttatgaatacacgctatcttgtttatatatgggcat |
284 |
Q |
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||||||||||| |||||||||||||||||||||||| ||| ||||||||| ||||||||||||| |
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| T |
38541323 |
cgacatagtaagttctaaatttctgcacttatgaattcacactatcttgtatatatatgggcat |
38541260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 22 - 284
Target Start/End: Original strand, 25223606 - 25223868
Alignment:
| Q |
22 |
tttcgtgttaaaataaagtgttaagagctcaaactatcgattttgaaaagnnnnnnngaaagagagcttgatacattatgtgtgatcgatggttcttgta |
121 |
Q |
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|||| |||||||||||||||| ||||||| |||||||| |||| |||||| ||||||||||| |||||||||||| |||| ||||||||||||| |
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| T |
25223606 |
tttcatgttaaaataaagtgtcaagagcttaaactatcaatttagaaaagaaaaaaagaaagagagctggatacattatgtatgattgatggttcttgta |
25223705 |
T |
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| Q |
122 |
ataattgagtatcaaaataaagttgtttatcacctttatttaattagtttattgcaatgatatgtttatcctttttatcatgaaaattgtcacatttctc |
221 |
Q |
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|||||||||||| ||||||||| ||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25223706 |
ataattgagtattaaaataaagatgtttttcacctttagttaattagtttactgcaatgatatgtttatcctttttatcatgaaaattgtcacatttctc |
25223805 |
T |
|
| Q |
222 |
gacatagtaaattctaaatttctgcacttatgaatacacgctatcttgtttatatatgggcat |
284 |
Q |
| |
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||||| ||| || ||||||| || | |||||||| || ||||||||| || |||||||||| |
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| T |
25223806 |
aacataataagttttaaatttttgtatctatgaatagacactatcttgtatagatatgggcat |
25223868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 242
Target Start/End: Original strand, 5343112 - 5343331
Alignment:
| Q |
22 |
tttcgtgttaaaataaagtgttaagagctcaaactatcgattttgaaaagnnnnnnngaaagagagcttgatacattatgtgtgatcgat--ggttcttg |
119 |
Q |
| |
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|||| |||||||||||||||| ||||| | |||||||| ||||||||||| |||| |||||||||||| ||| | | || ||| | |||||| |
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| T |
5343112 |
tttcatgttaaaataaagtgtcaagaggttaaactatcaattttgaaaagaaaaa---aaagggagcttgatacaatatatctcattgatatgtttcttg |
5343208 |
T |
|
| Q |
120 |
taataattgagtatcaaaataaagttgtttatcacctttatttaattagtttattgcaatgatatgtttatcctttt-tatcatgaaaattgtcacattt |
218 |
Q |
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|||||||||||||| |||||||| | ||| ||| ||||||||||||||||||| | ||| ||||| ||||||||||| ||||||| |||||||||||||| |
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| T |
5343209 |
taataattgagtattaaaataaaat-gttcatcgcctttatttaattagtttacttcaacgatatatttatccttttttatcatggaaattgtcacattt |
5343307 |
T |
|
| Q |
219 |
ctcgacatagtaaattctaaattt |
242 |
Q |
| |
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|| |||||| ||| ||||| |||| |
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| T |
5343308 |
cttgacataataagttctagattt |
5343331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 117 - 225
Target Start/End: Complemental strand, 3544732 - 3544623
Alignment:
| Q |
117 |
ttgtaataattgagtatcaaaataaagttgtttatcacctttatttaattagtttattgcaatgatatgttta-tcctttttatcatgaaaattgtcaca |
215 |
Q |
| |
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||||||||||| | ||| |||||||| ||||||| | ||||||||||| ||||||| ||| ||||||||| || ||||||| || |||||||||||| |
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| T |
3544732 |
ttgtaataattcaatattgaaataaagatgtttattgcgtttatttaattgttttattgtaataatatgtttattcttttttattataaaaattgtcaca |
3544633 |
T |
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| Q |
216 |
tttctcgaca |
225 |
Q |
| |
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|||||||||| |
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| T |
3544632 |
tttctcgaca |
3544623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 225
Target Start/End: Complemental strand, 3574295 - 3574165
Alignment:
| Q |
94 |
acattatgtgtgatcgatggttcttgtaataattgagtatcaaaataaagttgtttatcacctttatttaattagtttattgcaatgatatgtttatcct |
193 |
Q |
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||||||||| | || ||| |||||||||||| || | |||| |||||||| ||||| | |||||||||| ||||||| ||| ||||||||| | |
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| T |
3574295 |
acattatgtataattgatagttcttgtaatagttcaatatcgaaataaagatgtttcctgcatttatttaatagttttattgtaataatatgtttaat-t |
3574197 |
T |
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| Q |
194 |
ttttatcatgaaaattgtcacatttctcgaca |
225 |
Q |
| |
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||||| |||||||||||||||||||||||||| |
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| T |
3574196 |
ttttagcatgaaaattgtcacatttctcgaca |
3574165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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