View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8394_low_2 (Length: 609)
Name: NF8394_low_2
Description: NF8394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8394_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 536; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 18 - 599
Target Start/End: Original strand, 10146738 - 10147315
Alignment:
| Q |
18 |
gattttactcgtggattggacatttttgccacctctacaaacaatgtttatgttttagcttgggattattaaataaaggaaagtagtaagtataggacac |
117 |
Q |
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| T |
10146738 |
gattttactcgtggattggacatttttgccacctctacaaacaatgtttatgttttagcttgggatta---aataaaggaaagtagaaagtataggacac |
10146834 |
T |
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| Q |
118 |
cctttaaacaagttagttattctagtggttgaaaatttcatttggcgataaaagaaaagaacaaaatccacaacactccaggaatctctagaagacttaa |
217 |
Q |
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| T |
10146835 |
cctttaaaaaagttagttattctagtgattgtaaatttcatttggcgataaaagaaaagaacaaa-tccacaacactccacgaatctctagaagatttaa |
10146933 |
T |
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| Q |
218 |
cattgatagctaatatgcatcctaaagagttcaaaagatgacccaaatttcatgtgcactatcatgagagggccatcatgtgtaaaaacaaatttgcaaa |
317 |
Q |
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| T |
10146934 |
cattgatagctaatatgcatcctaaagagttcaaaagatgacccaaatttcatgtgcactatcatgagagggccatcatgtgtaaaaacaaatttgcaaa |
10147033 |
T |
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| Q |
318 |
atgaacctatcaaaatcaaacaccttgaacttatattgacatgactatttatcgttacgtgttgtaaaatatcaactttatgtagctatttgcacaacat |
417 |
Q |
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| T |
10147034 |
atgaacctatcaaaatcaaacaccttgaacttatattgacatgactatttatcgttacgtgttgtaaaatatcaactttatgtagctatttgcacaacat |
10147133 |
T |
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| Q |
418 |
acatatggtccaacaatattttttgcagttaggataaggattcgatttcttaacggacacttttttcctacattggtcccctatttaacttcgttgaaca |
517 |
Q |
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| T |
10147134 |
acatatggtccaacaatattttttgcagttaggataaggattcgatttcttaacggacacttttttcctacattggtcccctatttaacttcgttgaaca |
10147233 |
T |
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| Q |
518 |
aattattggtctttccatgcaatccttcttgtcttttatctctaatagtttgtgttagttcacattaagaattaagtattat |
599 |
Q |
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| T |
10147234 |
aattattggtctttccatgcaatccttcttgtcttttatctctaatagtttgtgttagttcacattaagaattaagtattat |
10147315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 57 - 182
Target Start/End: Original strand, 10145856 - 10145978
Alignment:
| Q |
57 |
aacaatgtttatgttttagcttgggattattaaataaaggaaagtagtaagtataggacaccctttaaacaagttagttattctagtggttgaaaatttc |
156 |
Q |
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| T |
10145856 |
aacaatgtttatgttttagcttgggatta---aataaagtaaagcagtgagaataggacaccctttaatgaagttagttattttagtggttgaaaatttc |
10145952 |
T |
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| Q |
157 |
atttggcgataaaagaaaagaacaaa |
182 |
Q |
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| T |
10145953 |
atttggcaataaaagaaaagaacaaa |
10145978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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