View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8394_low_21 (Length: 244)
Name: NF8394_low_21
Description: NF8394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8394_low_21 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 29019876 - 29019651
Alignment:
| Q |
1 |
tcattgagctattgttgactgttgctttaggatattatgataataatacgattgtttaattcgtgcagttgatctgccaatttggaaaagtgcttcattg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29019876 |
tcattgagctattgttgactgttgctttaggatattatgataataatacgattatttaattcgtgcagttgatctgccaatttggaaaagtgcttcattg |
29019777 |
T |
|
| Q |
101 |
nnnnnnnnnnnnnnnnnnnnnnnngtgtgactgtatgcagatcttagaaggacttcttaagctacctgacaacagggaatgtgcagactgttggactaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29019776 |
ttttgttttgtttttaacttttttgtgtgactgtatgcagatcttagaaggacttcttaagctacctgacaacagggaatgtgcagactgttggactaag |
29019677 |
T |
|
| Q |
201 |
tatacacttttcacaagccactgttt |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
29019676 |
tatacacttttcacaagccactgttt |
29019651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University