View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8394_low_24 (Length: 231)
Name: NF8394_low_24
Description: NF8394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8394_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 11 - 213
Target Start/End: Complemental strand, 48695263 - 48695061
Alignment:
| Q |
11 |
agtttggtggtggaaagaatttcagccatgctaacaacaccagaaagtggagatcttatctcatgtgacattgttgccagcacttgctttgctctcatag |
110 |
Q |
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| T |
48695263 |
agttttgtggtggaaagaatttcagccatgctaacaacaccagaaagtggagatcttatctcatgtgacattgttgccagcacttgctttgctctcatag |
48695164 |
T |
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| Q |
111 |
tttcctctattaaaaagatgagggaaacataataagctttattgctgcaaaaactagctaattagataaagggagatcttaatgattgaatcaaacaatc |
210 |
Q |
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| T |
48695163 |
tttcctctattaaaaagatgagggaaacataataagctttattgctacaaaaactaattaattagataaagggagattttaatgattgaatcaaacaatc |
48695064 |
T |
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| Q |
211 |
aac |
213 |
Q |
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||| |
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| T |
48695063 |
aac |
48695061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 122
Target Start/End: Original strand, 3455154 - 3455251
Alignment:
| Q |
25 |
aagaatttcagccatgctaacaacaccagaaagtggagatcttatctcatgtgacattgttgccagcacttgctttgctctcatagtttcctctatta |
122 |
Q |
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| T |
3455154 |
aagaatttcagccatgctaacaacaccagaaagcggtgatcttatctcatgagacattgttgccaacatttgttttgctctcattgtctcctctatta |
3455251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 4 - 122
Target Start/End: Original strand, 3479498 - 3479616
Alignment:
| Q |
4 |
tctgtcgagtttggtggtggaaagaatttcagccatgctaacaacaccagaaagtggagatcttatctcatgtgacattgttgccagcacttgctttgct |
103 |
Q |
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| T |
3479498 |
tctgtcaagttttgttgtagtaagaattttggccatgctaacaacatcagaaagtggtgatcttatctcatgagacattgttgccaacatttgttttgct |
3479597 |
T |
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| Q |
104 |
ctcatagtttcctctatta |
122 |
Q |
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| T |
3479598 |
ctcattgtctcctctatta |
3479616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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