View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8394_low_26 (Length: 205)
Name: NF8394_low_26
Description: NF8394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8394_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 13 - 192
Target Start/End: Complemental strand, 9580895 - 9580716
Alignment:
| Q |
13 |
atgaaagcatggagataagtgggaagtttctagaaatgccaaatttaaaggtgttcagttatggagatttgaaggctgccacaaagagtttcaaatcaga |
112 |
Q |
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| T |
9580895 |
atgaaagcatagagataagtgggaagtttctagaaatgccaaatttaaaggtgtttagttatggagatttgaaggctgccacaaagagtttcaaatcaga |
9580796 |
T |
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| Q |
113 |
tgcattacttggtgaaggaggttttggtaaagtgtataaaggttggttaaatgctgtgacactggcacctgcaaaagctg |
192 |
Q |
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| T |
9580795 |
tgcattacttggtgaaggaggttttggtaaagtgtataaaggttggttaaatgctgtgacactggcacctgcaaaagctg |
9580716 |
T |
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Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 81 - 161
Target Start/End: Original strand, 31140401 - 31140481
Alignment:
| Q |
81 |
ttgaaggctgccacaaagagtttcaaatcagatgcattacttggtgaaggaggttttggtaaagtgtataaaggttggtta |
161 |
Q |
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| T |
31140401 |
ttgaaagctgctacaaaaagcttcaaatctgatacattacttggtgaaggtggttttggaaaagtttataaaggttggtta |
31140481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 160
Target Start/End: Complemental strand, 31198642 - 31198564
Alignment:
| Q |
82 |
tgaaggctgccacaaagagtttcaaatcagatgcattacttggtgaaggaggttttggtaaagtgtataaaggttggtt |
160 |
Q |
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| T |
31198642 |
tgaaagctgctacaaaaagtttcaaatctgatacattacttggtgaatatggttttggaaaagtttataaaggttggtt |
31198564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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