View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8394_low_3 (Length: 604)
Name: NF8394_low_3
Description: NF8394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8394_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 564; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 18 - 589
Target Start/End: Complemental strand, 2835823 - 2835252
Alignment:
| Q |
18 |
gtccaaggttcgaccaccgctgctaacaaaacatactttcatgtataaaacaaaataaagattgaaacatccaagatagagaaaacatacttttaggtaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
2835823 |
gtccaaggttcgaccaccgctgctaacaaaacatactttcatgtataaaacaaaataaagattgaaacatccaagataaagaaaacatacttttaagtaa |
2835724 |
T |
|
| Q |
118 |
gtatcaatggctctatacaaaccatcatcagtagctctagcatgacttggaagagcaccagcaagagtaacaaactcatccaacctcaaattagcatcaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2835723 |
gtatcaatggctctatacaaaccatcatcagtagctctagcatgacttggaagagcaccagcaagagtaacaaactcatccaacctcaaattagcatcaa |
2835624 |
T |
|
| Q |
218 |
cagcagcttcacaaaggtacgaatcaaccaacttagcaaccttaaccaaagcagcaccacttttagcaccttcattatccaaactaacaaacctcttaac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2835623 |
cagcagcttcacaaaggtacgaatcaaccaacttagcaaccttaaccaaagcagcaccacttttagcaccttcattatccaaactaacaaacctcttaac |
2835524 |
T |
|
| Q |
318 |
aagcctaataacaagctcaaaatccaaaagtgtcccacaagtgtgactaaaagaaggaataacaagttctttcaaacaagcttgatctaactgccatgaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2835523 |
aagcctaataacaagctcaaaatccaaaagtgtcccacaagtgtgactaaaagaaggaataacaagttctttcaaacaagcttgatctaactgccatgaa |
2835424 |
T |
|
| Q |
418 |
attctcttctctagctcttgtctatagcttccatcaacacctaccatgttagctgttctcaatagcctaaggagaaagttacatggaattgaatctttct |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2835423 |
attctcttctctagctcttgtctatagcttccatcaacacctaccatgttagctgttctcaatagcctaaggagaaagttacatggaattgaatctttct |
2835324 |
T |
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| Q |
518 |
ctggtggtagaacattaactaaggtttctacaaagaaccttttcttcatccatgatgttgttacactctctg |
589 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2835323 |
ctggtggtagaacattaactaaggtttctacaaagaaccttttcttcatccatgatgttgttacactctctg |
2835252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 97 - 584
Target Start/End: Original strand, 44265223 - 44265710
Alignment:
| Q |
97 |
agaaaacatacttttaggtaagtatcaatggctctatacaaaccatcatcagtagctctagcatgacttggaagagcaccagcaagagtaacaaactcat |
196 |
Q |
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||||||| |||||| || ||||| |||||||||||||| |||||||||||||||||||| |||||| | ||||||||||||||||| | |||||||| | |
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| T |
44265223 |
agaaaacgtactttaagataagtgtcaatggctctatataaaccatcatcagtagctcttgcatgattaggaagagcaccagcaagtgcaacaaactgag |
44265322 |
T |
|
| Q |
197 |
ccaacctcaaattagcatcaacagcagcttcacaaaggtacgaatcaaccaacttagcaaccttaaccaaagcagcaccacttttagcaccttcattatc |
296 |
Q |
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||| |||||||||||||| | | |||||||| |||||| |||||||||| ||||||||||||||||||||||||||| ||||| | || |||| ||| |
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| T |
44265323 |
acaaactcaaattagcatccaaaccagcttcagcaaggtaacaatcaaccaatttagcaaccttaaccaaagcagcaccagttttaactccatcatgatc |
44265422 |
T |
|
| Q |
297 |
caaactaacaaacctcttaacaagcctaataacaagctcaaaatccaaaagtgtcccacaagtgtgactaaaagaaggaataacaagttctttcaaacaa |
396 |
Q |
| |
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||||||| |||||||||||| | ||||||||||||||||| ||||||||| ||||||||||| ||||| |||||||| || | ||||||||||| || |
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| T |
44265423 |
taaactaataaacctcttaaccaacctaataacaagctcaacatccaaaagggtcccacaagtatgactgaaagaaggtatcatgagttctttcaatgaa |
44265522 |
T |
|
| Q |
397 |
gcttgatctaactgccatgaaattctcttctctagctcttgtctatagcttccatcaacacctaccatgttagctgttctcaatagcctaaggagaaagt |
496 |
Q |
| |
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||||||||||||||||||||||||| ||||| || || || ||| | || ||| |||||||| |||||| | | || | |||||| |||| |
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| T |
44265523 |
gcttgatctaactgccatgaaattcgattctcaagatcggttcgataagtagactcgacaagaaccatgtttgctgttttaagaaggcgaaggaggaagt |
44265622 |
T |
|
| Q |
497 |
tacatggaattgaatctttctctggtggtagaacattaactaaggtttctacaaagaaccttttcttcatccatgatgttgttacact |
584 |
Q |
| |
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| |||||||| |||||||| |||||||| |||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
44265623 |
tgcatggaatggaatctttgtctggtggaagaacactgactaaggtttcaacaaagaaccttttcttcatccatgatgttgttacact |
44265710 |
T |
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