View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8394_low_4 (Length: 564)
Name: NF8394_low_4
Description: NF8394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8394_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 13 - 546
Target Start/End: Original strand, 38174591 - 38175126
Alignment:
| Q |
13 |
cagagaggaaaggtagaaatactcatctcaaccaaaattgtggcagctgagtgttatagaaatctgactgaattttcatcagagtagcgcatttttgcat |
112 |
Q |
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| T |
38174591 |
cagagaggaaaggtagaaatactcatcttaaccaaaattgtggcagctgagtgttatagaaatctgactgaattttcatcagagtagcgcatttttgcat |
38174690 |
T |
|
| Q |
113 |
ttaatcaacctgatgaatatgtggcagctgcatcttcatttttgtcatgtgaaatacgaaacatggaaacttgttattgattcgatgatgaacaaattag |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
38174691 |
ttaatcaacctgatgaatatgtggcagctgcatcttcatttttgtcatgtgaaatacgaaatatggaaactttttattgattcgatgatgaacaaattag |
38174790 |
T |
|
| Q |
213 |
ctaatcggaaaggtaaacatttgtactccttcatgtcacatcaaacacaattttatagcttcattaaataattaatgcatataatcatatttatagttca |
312 |
Q |
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| T |
38174791 |
ctaataggaaaggtaaacatttgtactccttcatgtcacatcaaacacaattttgtagcttcattaaataattaatgtatataatcatatttatagttcg |
38174890 |
T |
|
| Q |
313 |
attacattacttattcaataaacttaaaaactactttnnnnnnnnnnnnnnnnnnnnataaatgtaatcaaatgaagtatatat---tggtggagtattg |
409 |
Q |
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| T |
38174891 |
attacattacttattcaataaacttaaaaactatatt-----tttttttttttacttataaatgtaaccagatgaaatatatattggtggtggagtattg |
38174985 |
T |
|
| Q |
410 |
atgaattaagttcaatcaattctctcactatatattttcttt----gttttcttttcattctatacatagcccctaaaaggttataagtaagatgatatc |
505 |
Q |
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| T |
38174986 |
atgaattaaattcaatcaattctctcactatatttttttttttttgtttttcttttcattctatacaaagcccctaaaaggttataactaagatgatatc |
38175085 |
T |
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| Q |
506 |
tattcaaagataatttttgtgggggaggtgggtgggataga |
546 |
Q |
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| T |
38175086 |
tatttaaagataatttttgtgggggaggtgggtgggataga |
38175126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 342
Target Start/End: Original strand, 31836450 - 31836520
Alignment:
| Q |
272 |
ttcattaaataattaatgcatataatcatatttatagttcaattacattacttattcaataaacttaaaaa |
342 |
Q |
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| T |
31836450 |
ttcattgaataattaatgtatttagtcatatttatagaccaaatacattaattattcaatgaacctaaaaa |
31836520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 334
Target Start/End: Original strand, 38133432 - 38133491
Alignment:
| Q |
275 |
attaaataattaatgcatataatcatatttatagttcaattacattacttattcaataaa |
334 |
Q |
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||||||||||||||| || | ||||||||||||| |||| || |||| |||||||||||| |
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| T |
38133432 |
attaaataattaatgtatctgatcatatttataggtcaaatatattaattattcaataaa |
38133491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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