View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8394_low_5 (Length: 561)

Name: NF8394_low_5
Description: NF8394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8394_low_5
NF8394_low_5
[»] chr4 (22 HSPs)
chr4 (1-547)||(7670553-7671106)
chr4 (328-427)||(23292953-23293049)
chr4 (374-427)||(40613446-40613499)
chr4 (374-414)||(9996849-9996889)
chr4 (372-415)||(903930-903973)
chr4 (328-417)||(8423685-8423771)
chr4 (374-425)||(11135304-11135355)
chr4 (374-416)||(36635331-36635373)
chr4 (374-415)||(22440610-22440651)
chr4 (380-417)||(38148741-38148778)
chr4 (375-415)||(40179647-40179687)
chr4 (377-427)||(1747208-1747258)
chr4 (374-416)||(49652982-49653024)
chr4 (374-415)||(5775368-5775409)
chr4 (374-427)||(13134446-13134499)
chr4 (374-423)||(15029765-15029814)
chr4 (378-415)||(20179364-20179401)
chr4 (378-423)||(56257933-56257978)
chr4 (374-418)||(15659770-15659814)
chr4 (374-418)||(18576047-18576091)
chr4 (379-423)||(28964263-28964307)
chr4 (372-420)||(40865030-40865078)
[»] chr3 (26 HSPs)
chr3 (367-425)||(1438802-1438860)
chr3 (378-423)||(11251978-11252023)
chr3 (374-425)||(11313810-11313861)
chr3 (338-418)||(45451558-45451635)
chr3 (375-423)||(9624641-9624689)
chr3 (367-415)||(16192753-16192801)
chr3 (379-427)||(28917997-28918045)
chr3 (376-415)||(7614427-7614466)
chr3 (374-417)||(7928456-7928499)
chr3 (373-416)||(12704014-12704057)
chr3 (374-417)||(49505164-49505207)
chr3 (328-427)||(4987247-4987354)
chr3 (379-417)||(4990982-4991020)
chr3 (377-427)||(8383253-8383303)
chr3 (379-417)||(21257001-21257039)
chr3 (390-427)||(5339104-5339141)
chr3 (376-417)||(10690274-10690315)
chr3 (375-416)||(11493372-11493413)
chr3 (374-427)||(25093498-25093551)
chr3 (378-423)||(27277852-27277897)
chr3 (374-415)||(32804550-32804591)
chr3 (328-403)||(40993302-40993374)
chr3 (374-415)||(48202279-48202320)
chr3 (377-417)||(25948900-25948940)
chr3 (337-416)||(29508451-29508533)
chr3 (377-417)||(34307793-34307833)
[»] chr6 (30 HSPs)
chr6 (328-427)||(9658875-9658971)
chr6 (301-427)||(33001230-33001352)
chr6 (374-423)||(9025504-9025553)
chr6 (374-427)||(19040348-19040401)
chr6 (374-427)||(26562685-26562738)
chr6 (335-427)||(3398615-3398708)
chr6 (374-417)||(7265603-7265646)
chr6 (372-423)||(7723258-7723309)
chr6 (375-426)||(7996389-7996440)
chr6 (375-426)||(8022361-8022412)
chr6 (374-427)||(8931612-8931665)
chr6 (340-427)||(17841568-17841652)
chr6 (374-427)||(21924945-21924998)
chr6 (374-418)||(7086800-7086844)
chr6 (331-416)||(2040567-2040649)
chr6 (374-409)||(11591880-11591915)
chr6 (374-409)||(13360382-13360417)
chr6 (374-417)||(30866154-30866197)
chr6 (375-422)||(34073358-34073405)
chr6 (337-409)||(7377993-7378062)
chr6 (374-427)||(9027174-9027227)
chr6 (374-415)||(9617442-9617483)
chr6 (374-427)||(9629379-9629432)
chr6 (378-415)||(31579239-31579276)
chr6 (378-415)||(32839660-32839697)
chr6 (367-415)||(5462694-5462742)
chr6 (378-418)||(8805586-8805626)
chr6 (374-426)||(13364715-13364767)
chr6 (379-427)||(16766693-16766741)
chr6 (377-417)||(32511679-32511719)
[»] chr1 (32 HSPs)
chr1 (328-423)||(40181871-40181963)
chr1 (328-417)||(1486671-1486762)
chr1 (374-416)||(7918221-7918263)
chr1 (374-424)||(19324561-19324611)
chr1 (377-427)||(36878457-36878507)
chr1 (374-415)||(1864890-1864931)
chr1 (374-427)||(12443470-12443523)
chr1 (374-427)||(13436454-13436507)
chr1 (374-427)||(19562631-19562684)
chr1 (379-427)||(1262880-1262928)
chr1 (374-426)||(25098565-25098617)
chr1 (372-416)||(34298443-34298487)
chr1 (374-417)||(6427356-6427399)
chr1 (374-409)||(25361900-25361935)
chr1 (376-415)||(28674808-28674847)
chr1 (374-409)||(44482244-44482279)
chr1 (377-427)||(398778-398828)
chr1 (374-408)||(10233268-10233302)
chr1 (370-416)||(12713333-12713379)
chr1 (370-416)||(12717424-12717470)
chr1 (374-416)||(14332652-14332694)
chr1 (379-417)||(31015049-31015087)
chr1 (374-408)||(34371728-34371762)
chr1 (386-427)||(2896143-2896184)
chr1 (374-427)||(6415011-6415064)
chr1 (374-427)||(17831541-17831594)
chr1 (367-416)||(35999325-35999374)
chr1 (379-427)||(113295-113343)
chr1 (375-427)||(5898277-5898329)
chr1 (301-365)||(12993260-12993323)
chr1 (378-418)||(25452162-25452202)
chr1 (374-418)||(34712393-34712437)
[»] chr8 (24 HSPs)
chr8 (374-424)||(29776035-29776085)
chr8 (374-427)||(13844606-13844659)
chr8 (374-427)||(31236587-31236640)
chr8 (377-421)||(3025553-3025597)
chr8 (374-417)||(34897091-34897134)
chr8 (374-427)||(11927096-11927149)
chr8 (374-423)||(14731712-14731761)
chr8 (374-427)||(24362212-24362265)
chr8 (379-416)||(26434187-26434224)
chr8 (374-427)||(27213543-27213596)
chr8 (374-427)||(39954289-39954342)
chr8 (376-416)||(14134706-14134746)
chr8 (374-417)||(4611540-4611583)
chr8 (374-424)||(12606839-12606889)
chr8 (374-415)||(4786348-4786389)
chr8 (374-415)||(8798841-8798882)
chr8 (374-415)||(11803267-11803308)
chr8 (374-427)||(11944661-11944714)
chr8 (376-416)||(7658470-7658510)
chr8 (370-418)||(12559112-12559160)
chr8 (376-416)||(13203648-13203688)
chr8 (379-427)||(22651972-22652020)
chr8 (379-427)||(29510319-29510367)
chr8 (379-423)||(40332191-40332235)
[»] chr7 (28 HSPs)
chr7 (374-427)||(19206046-19206099)
chr7 (374-418)||(3721098-3721142)
chr7 (374-425)||(24146814-24146865)
chr7 (374-416)||(5835254-5835296)
chr7 (379-425)||(30813810-30813856)
chr7 (378-427)||(29787383-29787432)
chr7 (374-427)||(32308116-32308169)
chr7 (374-415)||(35297682-35297723)
chr7 (341-427)||(25481898-25481981)
chr7 (378-417)||(2424620-2424659)
chr7 (374-425)||(9482932-9482983)
chr7 (374-417)||(17851437-17851480)
chr7 (374-417)||(20549797-20549840)
chr7 (374-409)||(22602720-22602755)
chr7 (374-416)||(22868049-22868091)
chr7 (372-417)||(1401031-1401076)
chr7 (379-416)||(3991331-3991368)
chr7 (374-415)||(16341504-16341545)
chr7 (374-427)||(22484021-22484074)
chr7 (374-427)||(23191892-23191945)
chr7 (374-415)||(23849468-23849509)
chr7 (374-427)||(26329392-26329445)
chr7 (374-426)||(5548673-5548725)
chr7 (374-418)||(7328701-7328745)
chr7 (386-418)||(12289119-12289151)
chr7 (377-417)||(19992007-19992047)
chr7 (379-423)||(21880152-21880196)
chr7 (379-427)||(24339638-24339686)
[»] chr2 (14 HSPs)
chr2 (374-427)||(21616758-21616811)
chr2 (378-427)||(21782832-21782881)
chr2 (341-417)||(44860326-44860410)
chr2 (374-427)||(896207-896260)
chr2 (374-427)||(28677905-28677958)
chr2 (374-426)||(37411254-37411306)
chr2 (374-417)||(23718032-23718075)
chr2 (374-417)||(24105704-24105747)
chr2 (372-415)||(32199148-32199191)
chr2 (374-416)||(5367199-5367241)
chr2 (378-427)||(31284044-31284093)
chr2 (374-415)||(35449521-35449562)
chr2 (376-409)||(41942119-41942152)
chr2 (378-426)||(18276518-18276566)
[»] scaffold0020 (1 HSPs)
scaffold0020 (374-425)||(135322-135373)
[»] chr5 (25 HSPs)
chr5 (374-417)||(6471899-6471942)
chr5 (337-418)||(21194099-21194177)
chr5 (341-409)||(23015964-23016034)
chr5 (374-423)||(41091267-41091316)
chr5 (374-426)||(3966500-3966552)
chr5 (374-426)||(16203805-16203857)
chr5 (376-416)||(22423824-22423864)
chr5 (331-424)||(39205879-39205974)
chr5 (374-409)||(24273040-24273075)
chr5 (374-409)||(24389139-24389174)
chr5 (374-417)||(30502398-30502441)
chr5 (374-417)||(30542741-30542784)
chr5 (374-416)||(3751940-3751982)
chr5 (363-417)||(17593721-17593775)
chr5 (377-415)||(28588687-28588725)
chr5 (340-427)||(31084319-31084408)
chr5 (376-425)||(12927652-12927701)
chr5 (374-423)||(18421851-18421900)
chr5 (389-426)||(26716141-26716178)
chr5 (389-426)||(26985881-26985918)
chr5 (374-427)||(27144459-27144512)
chr5 (375-416)||(35017044-35017085)
chr5 (379-427)||(6326312-6326360)
chr5 (380-424)||(19438342-19438386)
chr5 (379-427)||(27932231-27932279)
[»] scaffold0123 (1 HSPs)
scaffold0123 (374-409)||(44535-44570)
[»] scaffold0036 (1 HSPs)
scaffold0036 (374-416)||(9757-9799)
[»] scaffold0168 (1 HSPs)
scaffold0168 (374-415)||(21051-21092)
[»] scaffold0044 (1 HSPs)
scaffold0044 (377-414)||(53189-53226)
[»] scaffold0008 (1 HSPs)
scaffold0008 (377-418)||(263385-263426)
[»] scaffold0223 (1 HSPs)
scaffold0223 (379-427)||(20168-20216)
[»] scaffold0103 (1 HSPs)
scaffold0103 (379-427)||(51807-51855)
[»] scaffold0021 (1 HSPs)
scaffold0021 (379-415)||(130490-130526)
[»] scaffold0004 (1 HSPs)
scaffold0004 (379-427)||(92803-92851)


Alignment Details
Target: chr4 (Bit Score: 467; Significance: 0; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 1 - 547
Target Start/End: Complemental strand, 7671106 - 7670553
Alignment:
Q  1 ggtggaattggtggacttgttttggctttggctgcaaagcatagaggttatgaagtgaaagtatttgaaaaggatttgagtgctattagaggtgaaggta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7671106 ggtggaattggtggacttgttttggctttggctgcaaagcatagaggttatgaagtgaaagtatttgaaaaggatttgagtgctattagaggtgaaggta 7671007  T
Q  101 gacatcgtggtccaattcaactcatgagtagtgctctttctgttttggaagctattgatgagagtgttgtgaagaagatcatggaggtaggttgtgtcac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7671006 gacatcgtggtccaattcaactcatgagtagtgctctttctgttttggaagctattgatgagagtgttgtgaagaagatcatggaggtaggttgtgtcac 7670907  T
Q  201 tggaaataggattaacggtcttgctgatggtgtttctggagagtggtatgttttccatttccttatctcgaatatgtatgatcacttttcattctttgct 300  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7670906 tggaaataggattaatggtcttgctgatggtgtttctggagagtggtatgttttccgtttccttatctcgaatatgtatgatcacttttcattctttgct 7670807  T
Q  301 tatgaagtacaaacacttttcagattaaggcgtattccggtgtcggacacatgtcgtgtccaacaccatcaatacatataattatactgaattatgtgat 400  Q
    ||||||||| ||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  7670806 tatgaagtagaaacacttttcagattaaggcgtgttccagtgttggacacatgtcgtgtccaacaccatcaatacatatagttatactgaattatgtgat 7670707  T
Q  401 tttctcaaactattagcaatgtcggcgacgtgtcaatctccgtgt-gtatctggtatccatattcgtgcttcatactacaggattaagctttcaaaacac 499  Q
    ||||||||||||||||||||||||||||||||||| | |||| || || || |||||||||||||||||||||||||| | |||||||||||||||||||    
T  7670706 tttctcaaactattagcaatgtcggcgacgtgtcagtttccgcgtcgtgtccggtatccatattcgtgcttcatactatatgattaagctttcaaaacac 7670607  T
Q  500 aagatggttac------ataaagatggttaaactacactttttgtgttattttt 547  Q
    |||||||||||      |||||||||||||||||||||||||||||||||||||    
T  7670606 aagatggttacataaagataaagatggttaaactacactttttgtgttattttt 7670553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 427
Target Start/End: Original strand, 23292953 - 23293049
Alignment:
Q  328 aggcgtattccggtgtcggacacatgtcgtgtccaacaccatcaatacatataattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    |||||| | |||||||||||||| |||||||||| |||||  || |   | ||||||||||||||||||||||||| ||||| |||||||  ||||||||    
T  23292953 aggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccgacact---tgtaattatactgaattatgtgattttttcaaattattagctgtgtcggcg 23293049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 374 - 427
Target Start/End: Complemental strand, 40613499 - 40613446
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    ||||||||||| |||||||||||||||||||||||| |||||||  ||||||||    
T  40613499 acatataattacactgaattatgtgattttctcaaaatattagcggtgtcggcg 40613446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 414
Target Start/End: Complemental strand, 9996889 - 9996849
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactatt 414  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  9996889 acatataattatactgaattatgtgattttctcaaattatt 9996849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 372 - 415
Target Start/End: Complemental strand, 903973 - 903930
Alignment:
Q  372 atacatataattatactgaattatgtgattttctcaaactatta 415  Q
    ||||||||||||| |||||||||||||||||||||||| |||||    
T  903973 atacatataattacactgaattatgtgattttctcaaattatta 903930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 328 - 417
Target Start/End: Original strand, 8423685 - 8423771
Alignment:
Q  328 aggcgtattccggtgtcggacacatgtcgtgtccaacaccatcaatacatataattatactgaattatgtgattttctcaaactattagc 417  Q
    |||||| | |||||||||||||  |||||||||| |||||  || |   |||||||| |||||||||||||||||||||||| |||||||    
T  8423685 aggcgtgtcccggtgtcggacagctgtcgtgtccgacaccgacatt---tataattacactgaattatgtgattttctcaaattattagc 8423771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 374 - 425
Target Start/End: Original strand, 11135304 - 11135355
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagcaatgtcgg 425  Q
    |||| |||||||| |||||||||| ||||||||||||||||||| |||||||    
T  11135304 acatgtaattatattgaattatgtaattttctcaaactattagcgatgtcgg 11135355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 416
Target Start/End: Complemental strand, 36635373 - 36635331
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattag 416  Q
    ||||||||||| |||||||||||||||||||||||| ||||||    
T  36635373 acatataattacactgaattatgtgattttctcaaattattag 36635331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 374 - 415
Target Start/End: Original strand, 22440610 - 22440651
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactatta 415  Q
    ||||||||||| |||||||||||||||||||||||| |||||    
T  22440610 acatataattacactgaattatgtgattttctcaaattatta 22440651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 380 - 417
Target Start/End: Original strand, 38148741 - 38148778
Alignment:
Q  380 aattatactgaattatgtgattttctcaaactattagc 417  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  38148741 aattacactgaattatgtgattttctcaaactattagc 38148778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 415
Target Start/End: Original strand, 40179647 - 40179687
Alignment:
Q  375 catataattatactgaattatgtgattttctcaaactatta 415  Q
    |||||||||| |||||||||||||||||| |||||||||||    
T  40179647 catataattacactgaattatgtgattttttcaaactatta 40179687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 427
Target Start/End: Complemental strand, 1747258 - 1747208
Alignment:
Q  377 tataattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    |||||||| |||||||||||||||||||||||  |||||||  ||||||||    
T  1747258 tataattaaactgaattatgtgattttctcaatttattagcggtgtcggcg 1747208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 374 - 416
Target Start/End: Original strand, 49652982 - 49653024
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattag 416  Q
    |||||||||||||||||||||| ||||||||| ||| ||||||    
T  49652982 acatataattatactgaattatctgattttcttaaattattag 49653024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 415
Target Start/End: Original strand, 5775368 - 5775409
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactatta 415  Q
    ||||||||||| ||| |||||||||||||||||||| |||||    
T  5775368 acatataattacacttaattatgtgattttctcaaattatta 5775409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 427
Target Start/End: Complemental strand, 13134499 - 13134446
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    ||||||||||| ||| |||||||||||||||| ||| ||| |||| ||||||||    
T  13134499 acatataattacactaaattatgtgattttcttaaattataagcagtgtcggcg 13134446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 423
Target Start/End: Complemental strand, 15029814 - 15029765
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagcaatgtc 423  Q
    ||||||||||| ||||||||||||||| || ||||| |||||||| ||||    
T  15029814 acatataattacactgaattatgtgatattttcaaattattagcagtgtc 15029765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 415
Target Start/End: Complemental strand, 20179401 - 20179364
Alignment:
Q  378 ataattatactgaattatgtgattttctcaaactatta 415  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  20179401 ataattatactgaattatatgattttcttaaactatta 20179364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 423
Target Start/End: Complemental strand, 56257978 - 56257933
Alignment:
Q  378 ataattatactgaattatgtgattttctcaaactattagcaatgtc 423  Q
    ||||||| |||||||||| ||||||||||||| |||||||| ||||    
T  56257978 ataattacactgaattatatgattttctcaaattattagcagtgtc 56257933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 374 - 418
Target Start/End: Original strand, 15659770 - 15659814
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagca 418  Q
    ||||||||||| || |||||||| |||||||||||| ||||||||    
T  15659770 acatataattacaccgaattatgagattttctcaaattattagca 15659814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 374 - 418
Target Start/End: Original strand, 18576047 - 18576091
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagca 418  Q
    ||||||||||| || ||||||||||||||||||||| ||| ||||    
T  18576047 acatataattacaccgaattatgtgattttctcaaattatcagca 18576091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 423
Target Start/End: Original strand, 28964263 - 28964307
Alignment:
Q  379 taattatactgaattatgtgattttctcaaactattagcaatgtc 423  Q
    |||||| |||||||||||||||||| ||||| ||||||| |||||    
T  28964263 taattacactgaattatgtgattttttcaaattattagctatgtc 28964307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 372 - 420
Target Start/End: Complemental strand, 40865078 - 40865030
Alignment:
Q  372 atacatataattatactgaattatgtgattttctcaaactattagcaat 420  Q
    |||||||||||||||||||||| || ||||||| |||| ||||| ||||    
T  40865078 atacatataattatactgaattgtgcgattttcacaaattattaacaat 40865030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 367 - 425
Target Start/End: Complemental strand, 1438860 - 1438802
Alignment:
Q  367 catcaatacatataattatactgaattatgtgattttctcaaactattagcaatgtcgg 425  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||    
T  1438860 catcaatacatataattatactgaattatgtgattttctcaaattgttagcgatgtcgg 1438802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 378 - 423
Target Start/End: Complemental strand, 11252023 - 11251978
Alignment:
Q  378 ataattatactgaattatgtgattttctcaaactattagcaatgtc 423  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||    
T  11252023 ataattacactgaattatgtgattttctcaaattattagcaatgtc 11251978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 374 - 425
Target Start/End: Original strand, 11313810 - 11313861
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagcaatgtcgg 425  Q
    ||||||||||| ||| |||||||||||||||||||| |||||||| ||||||    
T  11313810 acatataattacactaaattatgtgattttctcaaattattagcagtgtcgg 11313861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 418
Target Start/End: Complemental strand, 45451635 - 45451558
Alignment:
Q  338 cggtgtcggacacatgtcgtgtccaacaccatcaatacatataattatactgaattatgtgattttctcaaactattagca 418  Q
    ||||||||||||  |||||||||| |||||  ||   ||||| ||||||||||| ||||||||||||||||| ||||||||    
T  45451635 cggtgtcggacatgtgtcgtgtccgacaccgaca---catattattatactgaagtatgtgattttctcaaattattagca 45451558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 423
Target Start/End: Complemental strand, 9624689 - 9624641
Alignment:
Q  375 catataattatactgaattatgtgattttctcaaactattagcaatgtc 423  Q
    |||||||||| | |||||||||||||||||||||| |||||||| ||||    
T  9624689 catataattacattgaattatgtgattttctcaaattattagcagtgtc 9624641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 415
Target Start/End: Original strand, 16192753 - 16192801
Alignment:
Q  367 catcaatacatataattatactgaattatgtgattttctcaaactatta 415  Q
    |||||| ||||||||||| |||||||||||| ||||||||||| |||||    
T  16192753 catcaacacatataattacactgaattatgttattttctcaaattatta 16192801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 427
Target Start/End: Complemental strand, 28918045 - 28917997
Alignment:
Q  379 taattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    |||||| |||||||||||||||||| ||||| ||||||| |||||||||    
T  28918045 taattacactgaattatgtgattttttcaaattattagctatgtcggcg 28917997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 415
Target Start/End: Original strand, 7614427 - 7614466
Alignment:
Q  376 atataattatactgaattatgtgattttctcaaactatta 415  Q
    |||||||||||||||||||||||||||||| ||| |||||    
T  7614427 atataattatactgaattatgtgattttcttaaattatta 7614466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 417
Target Start/End: Complemental strand, 7928499 - 7928456
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagc 417  Q
    ||||||||||| |||||||||||||||||| ||||| |||||||    
T  7928499 acatataattacactgaattatgtgattttttcaaattattagc 7928456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 416
Target Start/End: Complemental strand, 12704057 - 12704014
Alignment:
Q  373 tacatataattatactgaattatgtgattttctcaaactattag 416  Q
    |||||||||||| ||||||||||||| |||||||||| ||||||    
T  12704057 tacatataattacactgaattatgtgcttttctcaaattattag 12704014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 417
Target Start/End: Original strand, 49505164 - 49505207
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagc 417  Q
    ||||||||||| ||| |||||||||||||||||||| |||||||    
T  49505164 acatataattacactaaattatgtgattttctcaaattattagc 49505207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 328 - 427
Target Start/End: Original strand, 4987247 - 4987354
Alignment:
Q  328 aggcgtattccggtgtcggacacatgtcgtgtccaacacc--------atcaatacatataattatactgaattatgtgattttctcaaactattagcaa 419  Q
    |||||| | |||||||||||||| ||||||||||||||||        | ||| || | |||||| |||||||||||||||||| ||||| |||||||      
T  4987247 aggcgtgtcccggtgtcggacacgtgtcgtgtccaacaccgacacgtcaccaacacttgtaattacactgaattatgtgattttttcaaattattagctg 4987346  T
Q  420 tgtcggcg 427  Q
    ||||||||    
T  4987347 tgtcggcg 4987354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 417
Target Start/End: Original strand, 4990982 - 4991020
Alignment:
Q  379 taattatactgaattatgtgattttctcaaactattagc 417  Q
    |||||| |||||||||||| |||||||||||||||||||    
T  4990982 taattacactgaattatgtaattttctcaaactattagc 4991020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 427
Target Start/End: Complemental strand, 8383303 - 8383253
Alignment:
Q  377 tataattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    |||||||| |||||||||| ||||||||||||| |||||||  ||||||||    
T  8383303 tataattacactgaattatatgattttctcaaattattagcggtgtcggcg 8383253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 417
Target Start/End: Original strand, 21257001 - 21257039
Alignment:
Q  379 taattatactgaattatgtgattttctcaaactattagc 417  Q
    ||||||||||||||||||||||||| ||||| |||||||    
T  21257001 taattatactgaattatgtgattttttcaaattattagc 21257039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 427
Target Start/End: Complemental strand, 5339141 - 5339104
Alignment:
Q  390 aattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  5339141 aattatgtgattttctcaaattattaacaatgtcggcg 5339104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 417
Target Start/End: Original strand, 10690274 - 10690315
Alignment:
Q  376 atataattatactgaattatgtgattttctcaaactattagc 417  Q
    ||||||||| |||||||||||||||||||||| | |||||||    
T  10690274 atataattacactgaattatgtgattttctcagattattagc 10690315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 416
Target Start/End: Original strand, 11493372 - 11493413
Alignment:
Q  375 catataattatactgaattatgtgattttctcaaactattag 416  Q
    |||||||||| |||||||||||||||||||||| | ||||||    
T  11493372 catataattacactgaattatgtgattttctcacattattag 11493413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 427
Target Start/End: Complemental strand, 25093551 - 25093498
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    ||||||||||| |||||||| |||||||||||||||  |||| || ||||||||    
T  25093551 acatataattacactgaattgtgtgattttctcaaatcattaacagtgtcggcg 25093498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 423
Target Start/End: Original strand, 27277852 - 27277897
Alignment:
Q  378 ataattatactgaattatgtgattttctcaaactattagcaatgtc 423  Q
    ||||||| ||| |||||||||||||||||||| |||||||| ||||    
T  27277852 ataattacactaaattatgtgattttctcaaattattagcagtgtc 27277897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 415
Target Start/End: Original strand, 32804550 - 32804591
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactatta 415  Q
    ||||||||||| ||| |||||||||||||||||||| |||||    
T  32804550 acatataattacactaaattatgtgattttctcaaattatta 32804591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 403
Target Start/End: Original strand, 40993302 - 40993374
Alignment:
Q  328 aggcgtattccggtgtcggacacatgtcgtgtccaacaccatcaatacatataattatactgaattatgtgatttt 403  Q
    |||||| | |||||||||||||  |||||||||| |||||  ||   |||||||||| ||||||||||||||||||    
T  40993302 aggcgtgtcccggtgtcggacatgtgtcgtgtccgacaccgaca---catataattacactgaattatgtgatttt 40993374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 415
Target Start/End: Original strand, 48202279 - 48202320
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactatta 415  Q
    ||||||||||| | | ||||||||||||||||||||||||||    
T  48202279 acatataattacattaaattatgtgattttctcaaactatta 48202320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 377 - 417
Target Start/End: Original strand, 25948900 - 25948940
Alignment:
Q  377 tataattatactgaattatgtgattttctcaaactattagc 417  Q
    |||||||| |||||||||||||||||| ||||| |||||||    
T  25948900 tataattacactgaattatgtgattttttcaaattattagc 25948940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 337 - 416
Target Start/End: Complemental strand, 29508533 - 29508451
Alignment:
Q  337 ccggtgtcggacacatgtcgtgtccaacaccatca---atacatataattatactgaattatgtgattttctcaaactattag 416  Q
    ||||||||||||   |||||||||| |||||| ||   | ||||||||||| |||||||||| ||||||| ||||| ||||||    
T  29508533 ccggtgtcggacgtgtgtcgtgtccgacaccaacatcgacacatataattacactgaattatatgattttttcaaattattag 29508451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 377 - 417
Target Start/End: Original strand, 34307793 - 34307833
Alignment:
Q  377 tataattatactgaattatgtgattttctcaaactattagc 417  Q
    |||||||| |||||| ||||||||||||||||| |||||||    
T  34307793 tataattacactgaaatatgtgattttctcaaattattagc 34307833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 328 - 427
Target Start/End: Complemental strand, 9658971 - 9658875
Alignment:
Q  328 aggcgtattccggtgtcggacacatgtcgtgtccaacaccatcaatacatataattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    |||||| |||||||||| ||||| ||||||||| ||||||  |||   ||||||||| |||||||||||||||||||| ||| |||||||  ||||||||    
T  9658971 aggcgtgttccggtgtcagacacgtgtcgtgtctaacaccgacaa---atataattacactgaattatgtgattttcttaaattattagcggtgtcggcg 9658875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 301 - 427
Target Start/End: Original strand, 33001230 - 33001352
Alignment:
Q  301 tatgaagtacaaacacttttcagattaaggcgtattccggtgtcggacacatgtcgtgtccaacaccatcaatacatataattatactgaattatgtgat 400  Q
    ||||||| ||||||||| ||  ||||| |||||||| ||||||| ||||| |||||||||| |||||  ||   |||||||||| | | |||||||||||    
T  33001230 tatgaagcacaaacactctttggatta-ggcgtatttcggtgtcagacacgtgtcgtgtccgacaccgaca---catataattacatttaattatgtgat 33001325  T
Q  401 tttctcaaactattagcaatgtcggcg 427  Q
    ||| ||||| |||||||| ||||||||    
T  33001326 tttttcaaattattagcagtgtcggcg 33001352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 374 - 423
Target Start/End: Original strand, 9025504 - 9025553
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagcaatgtc 423  Q
    ||||||||||| |||||||||||||||||||||||| |||||||| ||||    
T  9025504 acatataattacactgaattatgtgattttctcaaattattagcagtgtc 9025553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 374 - 427
Target Start/End: Complemental strand, 19040401 - 19040348
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    ||||||||||| |||||||||||||||||||||||| |||||||  ||||||||    
T  19040401 acatataattacactgaattatgtgattttctcaaattattagcggtgtcggcg 19040348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 374 - 427
Target Start/End: Complemental strand, 26562738 - 26562685
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    ||||||||||| |||||||||||||||||||||||| | |||||| ||||||||    
T  26562738 acatataattacactgaattatgtgattttctcaaatttttagcagtgtcggcg 26562685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 335 - 427
Target Start/End: Complemental strand, 3398708 - 3398615
Alignment:
Q  335 ttccggtgtcggacacatgtcgtgtccaacac--catcaatacatataattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    |||||||||||||||  |||||||||||||||  || | |||| |||||||| |||||||||| ||||||| ||||| |||||||  ||||||||    
T  3398708 ttccggtgtcggacatgtgtcgtgtccaacacgacaccgatacttataattacactgaattatatgatttt-tcaaattattagctgtgtcggcg 3398615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 374 - 417
Target Start/End: Original strand, 7265603 - 7265646
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagc 417  Q
    ||||||||||| |||||||||||||||||||||||| |||||||    
T  7265603 acatataattacactgaattatgtgattttctcaaattattagc 7265646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 372 - 423
Target Start/End: Original strand, 7723258 - 7723309
Alignment:
Q  372 atacatataattatactgaattatgtgattttctcaaactattagcaatgtc 423  Q
    |||||||||||||| ||||||||| ||||||||||||| |||||||| ||||    
T  7723258 atacatataattatgctgaattatatgattttctcaaattattagcagtgtc 7723309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 7996389 - 7996440
Alignment:
Q  375 catataattatactgaattatgtgattttctcaaactattagcaatgtcggc 426  Q
    |||||||||| |||||||||| ||||||||||||| |||||||| |||||||    
T  7996389 catataattacactgaattatatgattttctcaaattattagcagtgtcggc 7996440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 375 - 426
Target Start/End: Complemental strand, 8022412 - 8022361
Alignment:
Q  375 catataattatactgaattatgtgattttctcaaactattagcaatgtcggc 426  Q
    |||||||||| |||||||||| ||||||||||||| |||||||| |||||||    
T  8022412 catataattacactgaattatatgattttctcaaattattagcagtgtcggc 8022361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 374 - 427
Target Start/End: Original strand, 8931612 - 8931665
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    |||||||||||||||||||||||| ||||||||||| | |||||  ||||||||    
T  8931612 acatataattatactgaattatgttattttctcaaatttttagctgtgtcggcg 8931665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 340 - 427
Target Start/End: Original strand, 17841568 - 17841652
Alignment:
Q  340 gtgtcggacacatgtcgtgtccaacaccatcaatacatataattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    |||||||||||||||||||||| ||||| ||| |   | |||||| ||| |||||||||||||| ||||| |||||||  ||||||||    
T  17841568 gtgtcggacacatgtcgtgtccgacaccgtcact---tgtaattacactaaattatgtgattttttcaaattattagctgtgtcggcg 17841652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 374 - 427
Target Start/End: Original strand, 21924945 - 21924998
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    ||||||||||| |||||||||| |||| |||||||| |||||||| ||||||||    
T  21924945 acatataattacactgaattatttgatattctcaaattattagcagtgtcggcg 21924998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 418
Target Start/End: Complemental strand, 7086844 - 7086800
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagca 418  Q
    ||||||||||| ||| |||||||||||||||||||| ||||||||    
T  7086844 acatataattacactaaattatgtgattttctcaaattattagca 7086800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 416
Target Start/End: Original strand, 2040567 - 2040649
Alignment:
Q  331 cgtattccggtgtcggacacatgtcgtgtccaacaccatcaatacatataattatactgaattatgtgattttctcaaactattag 416  Q
    |||||| |||||||||| |||||| |||||| ||||     ||| |||||||| |||||||||| |||||||||||||| ||||||    
T  2040567 cgtatttcggtgtcggatacatgttgtgtccgacactg---atatatataattttactgaattacgtgattttctcaaattattag 2040649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 409
Target Start/End: Original strand, 11591880 - 11591915
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaa 409  Q
    ||||||||||| ||||||||||||||||||||||||    
T  11591880 acatataattacactgaattatgtgattttctcaaa 11591915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 409
Target Start/End: Original strand, 13360382 - 13360417
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaa 409  Q
    ||||||||||| ||||||||||||||||||||||||    
T  13360382 acatataattacactgaattatgtgattttctcaaa 13360417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 417
Target Start/End: Original strand, 30866154 - 30866197
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagc 417  Q
    ||||||||||| | |||||||||||||||||||||| |||||||    
T  30866154 acatataattacattgaattatgtgattttctcaaattattagc 30866197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 422
Target Start/End: Original strand, 34073358 - 34073405
Alignment:
Q  375 catataattatactgaattatgtgattttctcaaactattagcaatgt 422  Q
    |||||||||| ||||||||||| |||||||||||| ||||||| ||||    
T  34073358 catataattacactgaattatgagattttctcaaattattagcgatgt 34073405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 337 - 409
Target Start/End: Complemental strand, 7378062 - 7377993
Alignment:
Q  337 ccggtgtcggacacatgtcgtgtccaacaccatcaatacatataattatactgaattatgtgattttctcaaa 409  Q
    |||||||||||  |||||||||||| |||||  ||   |||||||||| | ||||||||||||||||||||||    
T  7378062 ccggtgtcggatgcatgtcgtgtccgacaccgaca---catataattacattgaattatgtgattttctcaaa 7377993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 427
Target Start/End: Complemental strand, 9027227 - 9027174
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    ||||||||||| || ||||||||||||| ||||||| |||||||  ||||||||    
T  9027227 acatataattacacggaattatgtgattatctcaaattattagcggtgtcggcg 9027174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 415
Target Start/End: Complemental strand, 9617483 - 9617442
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactatta 415  Q
    ||||||||||| | |||||||||||||||||||||| |||||    
T  9617483 acatataattacattgaattatgtgattttctcaaattatta 9617442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 427
Target Start/End: Complemental strand, 9629432 - 9629379
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    ||||||||||| | |||||||||||||||||||||| |||| ||  ||||||||    
T  9629432 acatataattacattgaattatgtgattttctcaaattattggcggtgtcggcg 9629379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 415
Target Start/End: Original strand, 31579239 - 31579276
Alignment:
Q  378 ataattatactgaattatgtgattttctcaaactatta 415  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  31579239 ataattacactgaattatgtgattttctcaaattatta 31579276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 415
Target Start/End: Original strand, 32839660 - 32839697
Alignment:
Q  378 ataattatactgaattatgtgattttctcaaactatta 415  Q
    |||||||||||| ||||||||||||||||||| |||||    
T  32839660 ataattatactggattatgtgattttctcaaattatta 32839697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 367 - 415
Target Start/End: Complemental strand, 5462742 - 5462694
Alignment:
Q  367 catcaatacatataattatactgaattatgtgattttctcaaactatta 415  Q
    |||||| | ||||||||| | |||||||||||||||||||||| |||||    
T  5462742 catcaacatatataattacaatgaattatgtgattttctcaaattatta 5462694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 418
Target Start/End: Original strand, 8805586 - 8805626
Alignment:
Q  378 ataattatactgaattatgtgattttctcaaactattagca 418  Q
    ||||||| ||| |||||||||||||||||||| ||||||||    
T  8805586 ataattacactaaattatgtgattttctcaaattattagca 8805626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 374 - 426
Target Start/End: Original strand, 13364715 - 13364767
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagcaatgtcggc 426  Q
    |||||| |||| |||||||||| ||||||||||||| ||| |||| |||||||    
T  13364715 acatatgattacactgaattatatgattttctcaaattataagcagtgtcggc 13364767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 427
Target Start/End: Complemental strand, 16766741 - 16766693
Alignment:
Q  379 taattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    |||||| |||||||||||||||||| ||||| |||||||  ||||||||    
T  16766741 taattacactgaattatgtgattttttcaaattattagctgtgtcggcg 16766693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 377 - 417
Target Start/End: Original strand, 32511679 - 32511719
Alignment:
Q  377 tataattatactgaattatgtgattttctcaaactattagc 417  Q
    |||||||| |||||||||||||||||||| ||| |||||||    
T  32511679 tataattacactgaattatgtgattttcttaaattattagc 32511719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 328 - 423
Target Start/End: Complemental strand, 40181963 - 40181871
Alignment:
Q  328 aggcgtattccggtgtcggacacatgtcgtgtccaacaccatcaatacatataattatactgaattatgtgattttctcaaactattagcaatgtc 423  Q
    |||||| | ||||||| |||||| ||| |||||| |||||    ||||||||||||| |||||||||||||||||||||||| |||||||| ||||    
T  40181963 aggcgtgtcccggtgtaggacacgtgttgtgtccgacaccg---atacatataattacactgaattatgtgattttctcaaattattagcagtgtc 40181871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 328 - 417
Target Start/End: Original strand, 1486671 - 1486762
Alignment:
Q  328 aggcgtattccggtgtcggacacatgtcgtgtccaacac--catcaatacatataattatactgaattatgtgattttctcaaactattagc 417  Q
    |||||| | |||||||||||||| |||||||||| ||||  || | | || |||||||| |||||||||||||||||| ||||| |||||||    
T  1486671 aggcgtgtcccggtgtcggacacgtgtcgtgtccgacacgacaccgacacttataattacactgaattatgtgattttttcaaattattagc 1486762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 416
Target Start/End: Original strand, 7918221 - 7918263
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattag 416  Q
    ||||||||||| |||||||||||||||||||||||| ||||||    
T  7918221 acatataattacactgaattatgtgattttctcaaattattag 7918263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 424
Target Start/End: Complemental strand, 19324611 - 19324561
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagcaatgtcg 424  Q
    ||||||||||| |||||||||||||||||||||||| ||| |||| |||||    
T  19324611 acatataattacactgaattatgtgattttctcaaattatcagcagtgtcg 19324561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 427
Target Start/End: Complemental strand, 36878507 - 36878457
Alignment:
Q  377 tataattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    |||||||| |||||||||||||||||||||||| |||||||  ||||||||    
T  36878507 tataattacactgaattatgtgattttctcaaattattagcggtgtcggcg 36878457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 374 - 415
Target Start/End: Original strand, 1864890 - 1864931
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactatta 415  Q
    ||||||||||| |||||||||||||||||||||||| |||||    
T  1864890 acatataattacactgaattatgtgattttctcaaattatta 1864931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 374 - 427
Target Start/End: Original strand, 12443470 - 12443523
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    ||||| ||||| |||||||||||||||||||||||| |||||||  ||||||||    
T  12443470 acatacaattacactgaattatgtgattttctcaaattattagctgtgtcggcg 12443523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 374 - 427
Target Start/End: Complemental strand, 13436507 - 13436454
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    ||||||||||| ||||||||||||||||| || ||| |||||||| ||||||||    
T  13436507 acatataattacactgaattatgtgatttccttaaattattagcagtgtcggcg 13436454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 374 - 427
Target Start/End: Original strand, 19562631 - 19562684
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    ||||||||||| |||||| |||| |||||||||||| |||||||| ||||||||    
T  19562631 acatataattacactgaactatgagattttctcaaattattagcagtgtcggcg 19562684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 427
Target Start/End: Complemental strand, 1262928 - 1262880
Alignment:
Q  379 taattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    |||||||| |||||||||||||||||||||| |||||||  ||||||||    
T  1262928 taattatattgaattatgtgattttctcaaattattagctgtgtcggcg 1262880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 426
Target Start/End: Original strand, 25098565 - 25098617
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagcaatgtcggc 426  Q
    ||||||||||| |||||||||||||||||||||||| ||| |||  |||||||    
T  25098565 acatataattacactgaattatgtgattttctcaaattatcagcggtgtcggc 25098617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 416
Target Start/End: Complemental strand, 34298487 - 34298443
Alignment:
Q  372 atacatataattatactgaattatgtgattttctcaaactattag 416  Q
    |||| |||||||| |||||||||||||||||||||||| ||||||    
T  34298487 atacgtataattacactgaattatgtgattttctcaaattattag 34298443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 417
Target Start/End: Complemental strand, 6427399 - 6427356
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagc 417  Q
    ||||||||||| | |||||||||||||||||||||| |||||||    
T  6427399 acatataattacattgaattatgtgattttctcaaattattagc 6427356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 409
Target Start/End: Complemental strand, 25361935 - 25361900
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaa 409  Q
    ||||||||||| ||||||||||||||||||||||||    
T  25361935 acatataattacactgaattatgtgattttctcaaa 25361900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 415
Target Start/End: Complemental strand, 28674847 - 28674808
Alignment:
Q  376 atataattatactgaattatgtgattttctcaaactatta 415  Q
    |||||||||||||||||||||| ||||||||||| |||||    
T  28674847 atataattatactgaattatgtaattttctcaaattatta 28674808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 409
Target Start/End: Complemental strand, 44482279 - 44482244
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaa 409  Q
    ||||||||||| ||||||||||||||||||||||||    
T  44482279 acatataattacactgaattatgtgattttctcaaa 44482244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 427
Target Start/End: Original strand, 398778 - 398828
Alignment:
Q  377 tataattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    |||||||| |||||||||||||||||| ||||| |||||||  ||||||||    
T  398778 tataattacactgaattatgtgattttttcaaattattagcggtgtcggcg 398828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 374 - 408
Target Start/End: Complemental strand, 10233302 - 10233268
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaa 408  Q
    ||||||||||| |||||||||||||||||||||||    
T  10233302 acatataattacactgaattatgtgattttctcaa 10233268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 370 - 416
Target Start/End: Original strand, 12713333 - 12713379
Alignment:
Q  370 caatacatataattatactgaattatgtgattttctcaaactattag 416  Q
    ||||||||||||||| ||| |||||||||||||||| ||| ||||||    
T  12713333 caatacatataattacactaaattatgtgattttcttaaattattag 12713379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 370 - 416
Target Start/End: Original strand, 12717424 - 12717470
Alignment:
Q  370 caatacatataattatactgaattatgtgattttctcaaactattag 416  Q
    ||||||||||||||| ||| |||||||||||||||| ||| ||||||    
T  12717424 caatacatataattacactaaattatgtgattttcttaaattattag 12717470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 374 - 416
Target Start/End: Original strand, 14332652 - 14332694
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattag 416  Q
    ||||||||||| ||| |||||||||||||||||||| ||||||    
T  14332652 acatataattacactaaattatgtgattttctcaaattattag 14332694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 31015087 - 31015049
Alignment:
Q  379 taattatactgaattatgtgattttctcaaactattagc 417  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  31015087 taattacactgaattatgtgattttctcaaattattagc 31015049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 374 - 408
Target Start/End: Complemental strand, 34371762 - 34371728
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaa 408  Q
    ||||||||||| |||||||||||||||||||||||    
T  34371762 acatataattacactgaattatgtgattttctcaa 34371728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 427
Target Start/End: Original strand, 2896143 - 2896184
Alignment:
Q  386 actgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    |||||||||||||||||||||||| |||||||  ||||||||    
T  2896143 actgaattatgtgattttctcaaattattagcggtgtcggcg 2896184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 427
Target Start/End: Original strand, 6415011 - 6415064
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    |||| |||||| |||| |||||||||||||||||||  |||||| |||||||||    
T  6415011 acatctaattaaactgtattatgtgattttctcaaataattagcgatgtcggcg 6415064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 427
Target Start/End: Original strand, 17831541 - 17831594
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    |||||| |||| ||||||| |||||||||||||||| |||||||  ||||||||    
T  17831541 acatatgattacactgaataatgtgattttctcaaattattagcggtgtcggcg 17831594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 416
Target Start/End: Original strand, 35999325 - 35999374
Alignment:
Q  367 catcaatacatataattatactgaattatgtgattttctcaaactattag 416  Q
    |||||| ||||||||||||||| |||||| ||||||||| ||| ||||||    
T  35999325 catcaacacatataattatactaaattatatgattttcttaaattattag 35999374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 427
Target Start/End: Complemental strand, 113343 - 113295
Alignment:
Q  379 taattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    |||||| |||||||||||||||||| ||||| |||||||  ||||||||    
T  113343 taattacactgaattatgtgattttttcaaattattagctgtgtcggcg 113295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 375 - 427
Target Start/End: Original strand, 5898277 - 5898329
Alignment:
Q  375 catataattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    |||||||||| |||||||||||||||||| ||| | |||||||  ||||||||    
T  5898277 catataattacactgaattatgtgattttttcagattattagcggtgtcggcg 5898329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 301 - 365
Target Start/End: Complemental strand, 12993323 - 12993260
Alignment:
Q  301 tatgaagtacaaacacttttcagattaaggcgtattccggtgtcggacacatgtcgtgtccaaca 365  Q
    ||||||| || ||||||||| |||||| | |||||| |||||||||||| ||||| |||||||||    
T  12993323 tatgaagcaccaacactttttagattatg-cgtatttcggtgtcggacatatgtcatgtccaaca 12993260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 418
Target Start/End: Original strand, 25452162 - 25452202
Alignment:
Q  378 ataattatactgaattatgtgattttctcaaactattagca 418  Q
    ||||||| ||||||||||| |||||||||||| ||||||||    
T  25452162 ataattacactgaattatgagattttctcaaattattagca 25452202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 374 - 418
Target Start/End: Original strand, 34712393 - 34712437
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagca 418  Q
    ||||||||||| ||| |||||||| ||||||||||| ||||||||    
T  34712393 acatataattacactaaattatgttattttctcaaattattagca 34712437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 374 - 424
Target Start/End: Complemental strand, 29776085 - 29776035
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagcaatgtcg 424  Q
    ||||||||||||||||||||| |||||||||||||| |||||||| |||||    
T  29776085 acatataattatactgaattacgtgattttctcaaattattagcagtgtcg 29776035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 374 - 427
Target Start/End: Original strand, 13844606 - 13844659
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    ||||||||||| ||| |||||||||||||||||||| |||||||| ||||||||    
T  13844606 acatataattacactcaattatgtgattttctcaaattattagcagtgtcggcg 13844659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 374 - 427
Target Start/End: Original strand, 31236587 - 31236640
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    ||||||||||| | |||||||||||||||||||||| |||||||| ||||||||    
T  31236587 acatataattacattgaattatgtgattttctcaaattattagcagtgtcggcg 31236640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 421
Target Start/End: Complemental strand, 3025597 - 3025553
Alignment:
Q  377 tataattatactgaattatgtgattttctcaaactattagcaatg 421  Q
    |||||||| |||||||||||||||||||||||| |||||||||||    
T  3025597 tataattacactgaattatgtgattttctcaaattattagcaatg 3025553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 374 - 417
Target Start/End: Complemental strand, 34897134 - 34897091
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagc 417  Q
    ||||||||||| |||||||||||||||||||||||| |||||||    
T  34897134 acatataattacactgaattatgtgattttctcaaattattagc 34897091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 374 - 427
Target Start/End: Original strand, 11927096 - 11927149
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    ||||||||||| |||||||||||||||||| ||||| ||||| || ||||||||    
T  11927096 acatataattacactgaattatgtgattttatcaaattattaacagtgtcggcg 11927149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 374 - 423
Target Start/End: Complemental strand, 14731761 - 14731712
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagcaatgtc 423  Q
    ||||||||||| ||| |||||||||||||||||||| |||||||| ||||    
T  14731761 acatataattacactaaattatgtgattttctcaaattattagcagtgtc 14731712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 374 - 427
Target Start/End: Original strand, 24362212 - 24362265
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    ||||||||||| |||||||||||||||| ||||||| |||||||  ||||||||    
T  24362212 acatataattacactgaattatgtgattctctcaaattattagcggtgtcggcg 24362265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 379 - 416
Target Start/End: Complemental strand, 26434224 - 26434187
Alignment:
Q  379 taattatactgaattatgtgattttctcaaactattag 416  Q
    |||||||| |||||||||||||||||||||||||||||    
T  26434224 taattatattgaattatgtgattttctcaaactattag 26434187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 374 - 427
Target Start/End: Complemental strand, 27213596 - 27213543
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    ||||||||||| | |||||||||||||||||| ||| |||||||| ||||||||    
T  27213596 acatataattacagtgaattatgtgattttctgaaattattagcagtgtcggcg 27213543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 374 - 427
Target Start/End: Original strand, 39954289 - 39954342
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    ||||||||||| ||| |||||||||||||||||||| |||||||  ||||||||    
T  39954289 acatataattacactaaattatgtgattttctcaaattattagcggtgtcggcg 39954342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 416
Target Start/End: Complemental strand, 14134746 - 14134706
Alignment:
Q  376 atataattatactgaattatgtgattttctcaaactattag 416  Q
    ||||||||| |||||||||||||||||||||||| ||||||    
T  14134746 atataattacactgaattatgtgattttctcaaattattag 14134706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 417
Target Start/End: Complemental strand, 4611583 - 4611540
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagc 417  Q
    ||||||||||| |||||||||||| ||||||||||| |||||||    
T  4611583 acatataattacactgaattatgttattttctcaaattattagc 4611540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 374 - 424
Target Start/End: Original strand, 12606839 - 12606889
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagcaatgtcg 424  Q
    ||||||||||| | |||||||| ||||||||||||| |||||||| |||||    
T  12606839 acatataattacattgaattatatgattttctcaaattattagcagtgtcg 12606889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 415
Target Start/End: Original strand, 4786348 - 4786389
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactatta 415  Q
    ||||||||||| |||||||||||||||||||| ||| |||||    
T  4786348 acatataattacactgaattatgtgattttcttaaattatta 4786389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 415
Target Start/End: Original strand, 8798841 - 8798882
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactatta 415  Q
    ||||||||||||| |||||||||| ||||||||||| |||||    
T  8798841 acatataattatattgaattatgttattttctcaaattatta 8798882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 415
Target Start/End: Complemental strand, 11803308 - 11803267
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactatta 415  Q
    ||||||||||| |||||||||||||||||||| ||| |||||    
T  11803308 acatataattacactgaattatgtgattttcttaaattatta 11803267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 427
Target Start/End: Complemental strand, 11944714 - 11944661
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    ||||||||||| ||||| |||||||||||| ||||| ||||| || ||||||||    
T  11944714 acatataattacactgagttatgtgattttatcaaattattaacagtgtcggcg 11944661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 376 - 416
Target Start/End: Complemental strand, 7658510 - 7658470
Alignment:
Q  376 atataattatactgaattatgtgattttctcaaactattag 416  Q
    ||||||||| |||||||||||| ||||||||||| ||||||    
T  7658510 atataattacactgaattatgtaattttctcaaattattag 7658470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 418
Target Start/End: Original strand, 12559112 - 12559160
Alignment:
Q  370 caatacatataattatactgaattatgtgattttctcaaactattagca 418  Q
    |||||||||| |||| |||||||||| | ||||||||||| ||||||||    
T  12559112 caatacatatgattacactgaattatatcattttctcaaattattagca 12559160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 376 - 416
Target Start/End: Complemental strand, 13203688 - 13203648
Alignment:
Q  376 atataattatactgaattatgtgattttctcaaactattag 416  Q
    ||||||||| |||||||||||| ||||||||||| ||||||    
T  13203688 atataattacactgaattatgtaattttctcaaattattag 13203648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 427
Target Start/End: Complemental strand, 22652020 - 22651972
Alignment:
Q  379 taattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    |||||||| |||||||||||||||| ||||| |||||||  ||||||||    
T  22652020 taattatattgaattatgtgattttttcaaattattagctgtgtcggcg 22651972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 427
Target Start/End: Original strand, 29510319 - 29510367
Alignment:
Q  379 taattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    ||||||||||||||| ||||||||| ||||| |||||||  ||||||||    
T  29510319 taattatactgaattttgtgattttttcaaattattagctgtgtcggcg 29510367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 423
Target Start/End: Complemental strand, 40332235 - 40332191
Alignment:
Q  379 taattatactgaattatgtgattttctcaaactattagcaatgtc 423  Q
    |||||| |||||||||||||||||||||||| |||| ||| ||||    
T  40332235 taattacactgaattatgtgattttctcaaattatttgcagtgtc 40332191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 374 - 427
Target Start/End: Complemental strand, 19206099 - 19206046
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    ||||||||||||| |||||||||||||||||||||| |||||||  ||||||||    
T  19206099 acatataattataatgaattatgtgattttctcaaattattagcggtgtcggcg 19206046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 418
Target Start/End: Complemental strand, 3721142 - 3721098
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagca 418  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||    
T  3721142 acatataattatactaaattatgtgattttctcaaattattagca 3721098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 374 - 425
Target Start/End: Complemental strand, 24146865 - 24146814
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagcaatgtcgg 425  Q
    ||||||||||||| |||||||||||||||||| ||| |||||||| ||||||    
T  24146865 acatataattatattgaattatgtgattttctaaaattattagcattgtcgg 24146814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 416
Target Start/End: Complemental strand, 5835296 - 5835254
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattag 416  Q
    ||||||||||| |||||||||||| ||||||||||||||||||    
T  5835296 acatataattacactgaattatgttattttctcaaactattag 5835254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 425
Target Start/End: Complemental strand, 30813856 - 30813810
Alignment:
Q  379 taattatactgaattatgtgattttctcaaactattagcaatgtcgg 425  Q
    |||||| |||||||||||| ||||||||||| |||||||||||||||    
T  30813856 taattacactgaattatgtaattttctcaaattattagcaatgtcgg 30813810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 378 - 427
Target Start/End: Original strand, 29787383 - 29787432
Alignment:
Q  378 ataattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    ||||||| |||||||||||||||||||||||| |||||||  ||||||||    
T  29787383 ataattacactgaattatgtgattttctcaaattattagcggtgtcggcg 29787432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 374 - 427
Target Start/End: Complemental strand, 32308169 - 32308116
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    ||||| ||||| |||||||||||||||||||||||| |||||||  ||||||||    
T  32308169 acatacaattacactgaattatgtgattttctcaaattattagcggtgtcggcg 32308116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 374 - 415
Target Start/End: Original strand, 35297682 - 35297723
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactatta 415  Q
    ||||||||||||| |||||||||||||||||||||| |||||    
T  35297682 acatataattataatgaattatgtgattttctcaaattatta 35297723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 427
Target Start/End: Complemental strand, 25481981 - 25481898
Alignment:
Q  341 tgtcggacacatgtcgtgtccaacaccatcaatacatataattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    |||||||||||| |||||||| |||||| || |   | |||||| |||||||||||||||||| ||||| |||||||  ||||||||    
T  25481981 tgtcggacacatatcgtgtccgacaccaacact---tgtaattacactgaattatgtgattttttcaaattattagctgtgtcggcg 25481898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 417
Target Start/End: Complemental strand, 2424659 - 2424620
Alignment:
Q  378 ataattatactgaattatgtgattttctcaaactattagc 417  Q
    ||||||| |||||||||||||||||||||||| |||||||    
T  2424659 ataattacactgaattatgtgattttctcaaattattagc 2424620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 425
Target Start/End: Complemental strand, 9482983 - 9482932
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagcaatgtcgg 425  Q
    ||||||||||| |||||||| ||||||||||||||| ||| ||| |||||||    
T  9482983 acatataattacactgaattgtgtgattttctcaaattatcagcgatgtcgg 9482932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 417
Target Start/End: Complemental strand, 17851480 - 17851437
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagc 417  Q
    ||||||||||| |||||||||||||||||||| ||| |||||||    
T  17851480 acatataattacactgaattatgtgattttctaaaattattagc 17851437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 417
Target Start/End: Complemental strand, 20549840 - 20549797
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagc 417  Q
    ||||||||||| ||||||||| |||||||||||||| |||||||    
T  20549840 acatataattacactgaattacgtgattttctcaaattattagc 20549797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 409
Target Start/End: Original strand, 22602720 - 22602755
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaa 409  Q
    ||||||||||| ||||||||||||||||||||||||    
T  22602720 acatataattacactgaattatgtgattttctcaaa 22602755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 374 - 416
Target Start/End: Complemental strand, 22868091 - 22868049
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattag 416  Q
    ||||||||||| |||||||||||||||||||||| | ||||||    
T  22868091 acatataattacactgaattatgtgattttctcatattattag 22868049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 417
Target Start/End: Complemental strand, 1401076 - 1401031
Alignment:
Q  372 atacatataattatactgaattatgtgattttctcaaactattagc 417  Q
    |||| |||||||| |||||||||||||| ||||||||| |||||||    
T  1401076 atacttataattacactgaattatgtgagtttctcaaattattagc 1401031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 416
Target Start/End: Complemental strand, 3991368 - 3991331
Alignment:
Q  379 taattatactgaattatgtgattttctcaaactattag 416  Q
    ||||||||||||||||||||||||| ||||| ||||||    
T  3991368 taattatactgaattatgtgattttttcaaattattag 3991331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 415
Target Start/End: Complemental strand, 16341545 - 16341504
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactatta 415  Q
    ||||||||||| ||| |||||||||||||||||||| |||||    
T  16341545 acatataattacacttaattatgtgattttctcaaattatta 16341504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 427
Target Start/End: Complemental strand, 22484074 - 22484021
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    |||||||||||||||||||||||  ||||||| ||| |||||||  ||||||||    
T  22484074 acatataattatactgaattatgcaattttctaaaattattagcggtgtcggcg 22484021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 427
Target Start/End: Complemental strand, 23191945 - 23191892
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    |||| |||||| |||||| ||||||||||||||||| |||||||  ||||||||    
T  23191945 acatgtaattacactgaaatatgtgattttctcaaattattagcggtgtcggcg 23191892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 415
Target Start/End: Original strand, 23849468 - 23849509
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactatta 415  Q
    ||||||||||||||||||||||||| |||||| ||| |||||    
T  23849468 acatataattatactgaattatgtgtttttcttaaattatta 23849509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 427
Target Start/End: Original strand, 26329392 - 26329445
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    ||||||||||| |||||||| |||| |||||||||| ||||| | |||||||||    
T  26329392 acatataattacactgaattgtgtgtttttctcaaattattaacgatgtcggcg 26329445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 374 - 426
Target Start/End: Complemental strand, 5548725 - 5548673
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagcaatgtcggc 426  Q
    ||||||||||| |||||||||| ||||||||||||| ||| |||  |||||||    
T  5548725 acatataattacactgaattatttgattttctcaaattatcagcggtgtcggc 5548673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 374 - 418
Target Start/End: Original strand, 7328701 - 7328745
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagca 418  Q
    ||||||||||| ||| |||||||| ||||||||||| ||||||||    
T  7328701 acatataattacactaaattatgttattttctcaaattattagca 7328745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 386 - 418
Target Start/End: Complemental strand, 12289151 - 12289119
Alignment:
Q  386 actgaattatgtgattttctcaaactattagca 418  Q
    |||||||||||||||||||||||| ||||||||    
T  12289151 actgaattatgtgattttctcaaattattagca 12289119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 377 - 417
Target Start/End: Complemental strand, 19992047 - 19992007
Alignment:
Q  377 tataattatactgaattatgtgattttctcaaactattagc 417  Q
    |||||||| |||||| ||||||||||||||||| |||||||    
T  19992047 tataattacactgaaatatgtgattttctcaaattattagc 19992007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 423
Target Start/End: Complemental strand, 21880196 - 21880152
Alignment:
Q  379 taattatactgaattatgtgattttctcaaactattagcaatgtc 423  Q
    |||||| |||||||||||| ||||||||||| ||||||| |||||    
T  21880196 taattacactgaattatgtaattttctcaaattattagcgatgtc 21880152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 427
Target Start/End: Complemental strand, 24339686 - 24339638
Alignment:
Q  379 taattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    |||||| |||||||||||||||||| ||||| |||||||  ||||||||    
T  24339686 taattacactgaattatgtgattttttcaaattattagctgtgtcggcg 24339638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 374 - 427
Target Start/End: Complemental strand, 21616811 - 21616758
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    ||||||||||| |||||||||||||||||||||||| |||||||  ||||||||    
T  21616811 acatataattacactgaattatgtgattttctcaaattattagcggtgtcggcg 21616758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 378 - 427
Target Start/End: Original strand, 21782832 - 21782881
Alignment:
Q  378 ataattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    ||||||| |||||||||||||||||||||||| |||||||| ||||||||    
T  21782832 ataattacactgaattatgtgattttctcaaattattagcagtgtcggcg 21782881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 341 - 417
Target Start/End: Complemental strand, 44860410 - 44860326
Alignment:
Q  341 tgtcggacacatgtcgtgtccaacaccatca--------atacatataattatactgaattatgtgattttctcaaactattagc 417  Q
    |||||||||||||||||||||||||||| ||        | ||||||||||| ||||||||||| |||||||||||| |||||||    
T  44860410 tgtcggacacatgtcgtgtccaacaccaacacgacaccgacacatataattacactgaattatgcgattttctcaaattattagc 44860326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 374 - 427
Target Start/End: Complemental strand, 896260 - 896207
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    |||||| |||| | |||| |||||||||||||||||||||||||| ||||||||    
T  896260 acatatgattacattgaaatatgtgattttctcaaactattagcagtgtcggcg 896207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 374 - 427
Target Start/End: Complemental strand, 28677958 - 28677905
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    ||||||||||| |||||||||||||||||| ||||| |||||||  ||||||||    
T  28677958 acatataattacactgaattatgtgattttttcaaattattagcggtgtcggcg 28677905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 426
Target Start/End: Original strand, 37411254 - 37411306
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagcaatgtcggc 426  Q
    ||||||||| | |||||||||||||||||||||||| |||||||  |||||||    
T  37411254 acatataatcacactgaattatgtgattttctcaaattattagcggtgtcggc 37411306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 417
Target Start/End: Complemental strand, 23718075 - 23718032
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagc 417  Q
    ||||||||||| |||||||||||||| ||||||||| |||||||    
T  23718075 acatataattacactgaattatgtgactttctcaaattattagc 23718032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 417
Target Start/End: Complemental strand, 24105747 - 24105704
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagc 417  Q
    ||||||||||| |||||||||||||| ||||||||| |||||||    
T  24105747 acatataattacactgaattatgtgactttctcaaattattagc 24105704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 415
Target Start/End: Original strand, 32199148 - 32199191
Alignment:
Q  372 atacatataattatactgaattatgtgattttctcaaactatta 415  Q
    ||||||||||||||||| |||||||||||||| ||||| |||||    
T  32199148 atacatataattatacttaattatgtgattttatcaaattatta 32199191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 374 - 416
Target Start/End: Complemental strand, 5367241 - 5367199
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattag 416  Q
    ||||||||||| ||||||||||||||||| |||||| ||||||    
T  5367241 acatataattacactgaattatgtgatttcctcaaattattag 5367199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 427
Target Start/End: Complemental strand, 31284093 - 31284044
Alignment:
Q  378 ataattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    ||||||| | || ||||||||||||||||||| |||||||| ||||||||    
T  31284093 ataattacaatggattatgtgattttctcaaattattagcagtgtcggcg 31284044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 415
Target Start/End: Complemental strand, 35449562 - 35449521
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactatta 415  Q
    ||||||||||| |||||||| ||||||||||||||| |||||    
T  35449562 acatataattacactgaattctgtgattttctcaaattatta 35449521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 409
Target Start/End: Complemental strand, 41942152 - 41942119
Alignment:
Q  376 atataattatactgaattatgtgattttctcaaa 409  Q
    |||||||||||||||||||||| |||||||||||    
T  41942152 atataattatactgaattatgtaattttctcaaa 41942119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 426
Target Start/End: Complemental strand, 18276566 - 18276518
Alignment:
Q  378 ataattatactgaattatgtgattttctcaaactattagcaatgtcggc 426  Q
    ||||||| ||||||||| |||||||||||||| |||||||  |||||||    
T  18276566 ataattacactgaattaagtgattttctcaaattattagcggtgtcggc 18276518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 374 - 425
Target Start/End: Original strand, 135322 - 135373
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagcaatgtcgg 425  Q
    ||||||||||| || ||||||||||||||||||||| |||||||| ||||||    
T  135322 acatataattacacagaattatgtgattttctcaaattattagcagtgtcgg 135373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 374 - 417
Target Start/End: Original strand, 6471899 - 6471942
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagc 417  Q
    ||||||||||| |||||||||||||||||||||||| |||||||    
T  6471899 acatataattacactgaattatgtgattttctcaaattattagc 6471942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 337 - 418
Target Start/End: Original strand, 21194099 - 21194177
Alignment:
Q  337 ccggtgtcggacacatgtcgtgtccaacaccatcaatacatataattatactgaattatgtgattttctcaaactattagca 418  Q
    |||||||| ||||  |||||||||||||||||   |||| |||||||| ||||||| |||||||||||||||| || |||||    
T  21194099 ccggtgtctgacatgtgtcgtgtccaacacca---atacctataattacactgaatgatgtgattttctcaaattactagca 21194177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 341 - 409
Target Start/End: Original strand, 23015964 - 23016034
Alignment:
Q  341 tgtcggacacatgtcgtgtccaacac--catcaatacatataattatactgaattatgtgattttctcaaa 409  Q
    ||||||||||||||||||||| | ||  |||| | || |||||||| ||||||||||||||||||||||||    
T  23015964 tgtcggacacatgtcgtgtccgatacaacatcgacacctataattacactgaattatgtgattttctcaaa 23016034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 374 - 423
Target Start/End: Original strand, 41091267 - 41091316
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagcaatgtc 423  Q
    ||||||||||| ||||||||||||||||||||||||  ||||||| ||||    
T  41091267 acatataattacactgaattatgtgattttctcaaatcattagcagtgtc 41091316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 426
Target Start/End: Complemental strand, 3966552 - 3966500
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagcaatgtcggc 426  Q
    ||||||||||| |||||||| ||||||||||||||| |||||||  |||||||    
T  3966552 acatataattacactgaattgtgtgattttctcaaattattagcggtgtcggc 3966500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 426
Target Start/End: Original strand, 16203805 - 16203857
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagcaatgtcggc 426  Q
    ||||||||||| ||| ||||||| |||||||||||| |||||||| |||||||    
T  16203805 acatataattacactaaattatgagattttctcaaattattagcagtgtcggc 16203857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 416
Target Start/End: Original strand, 22423824 - 22423864
Alignment:
Q  376 atataattatactgaattatgtgattttctcaaactattag 416  Q
    ||||||||||| |||||||||||||||||||||| ||||||    
T  22423824 atataattatattgaattatgtgattttctcaaattattag 22423864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 424
Target Start/End: Complemental strand, 39205974 - 39205879
Alignment:
Q  331 cgtattccggtgtcggacacatgtcgtgtccaacac--catcaatacatataattatactgaattatgtgattttctcaaactattagcaatgtcg 424  Q
    ||||| |||||||||| ||| |||||||||  ||||  || ||| ||||||||||| ||  |||||| ||||||||||||| |||||||| |||||    
T  39205974 cgtatcccggtgtcgggcacgtgtcgtgtcggacacgacaccaacacatataattacacctaattatatgattttctcaaattattagcagtgtcg 39205879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 409
Target Start/End: Original strand, 24273040 - 24273075
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaa 409  Q
    ||||||||||| ||||||||||||||||||||||||    
T  24273040 acatataattacactgaattatgtgattttctcaaa 24273075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 409
Target Start/End: Complemental strand, 24389174 - 24389139
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaa 409  Q
    ||||||||||| ||||||||||||||||||||||||    
T  24389174 acatataattacactgaattatgtgattttctcaaa 24389139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 417
Target Start/End: Original strand, 30502398 - 30502441
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagc 417  Q
    ||||||||||| ||||||||| |||||||||||||| |||||||    
T  30502398 acatataattacactgaattaagtgattttctcaaattattagc 30502441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 417
Target Start/End: Original strand, 30542741 - 30542784
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagc 417  Q
    ||||||||||| ||||||||| |||||||||||||| |||||||    
T  30542741 acatataattacactgaattaagtgattttctcaaattattagc 30542784  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 374 - 416
Target Start/End: Original strand, 3751940 - 3751982
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattag 416  Q
    ||||||||||||||| | |||||||||||||||||| ||||||    
T  3751940 acatataattatacttagttatgtgattttctcaaattattag 3751982  T

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Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 363 - 417
Target Start/End: Original strand, 17593721 - 17593775
Alignment:
Q  363 acaccatcaatacatataattatactgaattatgtgattttctcaaactattagc 417  Q
    |||||| ||| | ||||||||| ||||||||| |||||||||||||| |||||||    
T  17593721 acaccaccaacatatataattacactgaattacgtgattttctcaaattattagc 17593775  T

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Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 415
Target Start/End: Original strand, 28588687 - 28588725
Alignment:
Q  377 tataattatactgaattatgtgattttctcaaactatta 415  Q
    |||||||| |||||||||||||||||||||||| |||||    
T  28588687 tataattacactgaattatgtgattttctcaaattatta 28588725  T

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Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 340 - 427
Target Start/End: Complemental strand, 31084408 - 31084319
Alignment:
Q  340 gtgtcggacacatgtcgtgtccaacac--catcaatacatataattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    ||||||||||| |||||||||| ||||  |||| | || | |||||| | |||||||||||||||| ||||| |||||||  ||||||||    
T  31084408 gtgtcggacacgtgtcgtgtccgacacgacatcgacacttgtaattacattgaattatgtgattttttcaaattattagctgtgtcggcg 31084319  T

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Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 425
Target Start/End: Complemental strand, 12927701 - 12927652
Alignment:
Q  376 atataattatactgaattatgtgattttctcaaactattagcaatgtcgg 425  Q
    ||||||||| ||| |||||| ||||||||||||| ||||||| |||||||    
T  12927701 atataattacactaaattatatgattttctcaaattattagcgatgtcgg 12927652  T

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Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 423
Target Start/End: Original strand, 18421851 - 18421900
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagcaatgtc 423  Q
    ||||||||||| |||| ||||||||||||||||||| ||| |||| ||||    
T  18421851 acatataattacactggattatgtgattttctcaaattatcagcagtgtc 18421900  T

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Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 426
Target Start/End: Complemental strand, 26716178 - 26716141
Alignment:
Q  389 gaattatgtgattttctcaaactattagcaatgtcggc 426  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  26716178 gaattatgtgattttctcaaattattagcagtgtcggc 26716141  T

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Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 426
Target Start/End: Complemental strand, 26985918 - 26985881
Alignment:
Q  389 gaattatgtgattttctcaaactattagcaatgtcggc 426  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  26985918 gaattatgtgattttctcaaattattagcagtgtcggc 26985881  T

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Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 427
Target Start/End: Complemental strand, 27144512 - 27144459
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    ||||||||||| ||| ||||||||||||| |||||| |||||||  ||||||||    
T  27144512 acatataattacactaaattatgtgatttcctcaaattattagcggtgtcggcg 27144459  T

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Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 416
Target Start/End: Complemental strand, 35017085 - 35017044
Alignment:
Q  375 catataattatactgaattatgtgattttctcaaactattag 416  Q
    |||||||||| ||| |||||||||||||||||||| ||||||    
T  35017085 catataattacactaaattatgtgattttctcaaattattag 35017044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 427
Target Start/End: Original strand, 6326312 - 6326360
Alignment:
Q  379 taattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    |||||| |||||||||||| ||||||||||| || |||| |||||||||    
T  6326312 taattacactgaattatgtaattttctcaaattactagcgatgtcggcg 6326360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 380 - 424
Target Start/End: Complemental strand, 19438386 - 19438342
Alignment:
Q  380 aattatactgaattatgtgattttctcaaactattagcaatgtcg 424  Q
    ||||| |||||||||||||||||||||||| ||| ||| ||||||    
T  19438386 aattacactgaattatgtgattttctcaaattatcagcgatgtcg 19438342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 427
Target Start/End: Complemental strand, 27932279 - 27932231
Alignment:
Q  379 taattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    |||||| |||||||||||| ||||||||||| |||||||  ||||||||    
T  27932279 taattacactgaattatgtaattttctcaaattattagcggtgtcggcg 27932231  T

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Target: scaffold0123 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 409
Target Start/End: Original strand, 44535 - 44570
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaa 409  Q
    ||||||||||| ||||||||||||||||||||||||    
T  44535 acatataattacactgaattatgtgattttctcaaa 44570  T

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Target: scaffold0036 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 374 - 416
Target Start/End: Original strand, 9757 - 9799
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactattag 416  Q
    ||||||||||| ||||||||| |||||||||||||| ||||||    
T  9757 acatataattacactgaattaagtgattttctcaaattattag 9799  T

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Target: scaffold0168 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 415
Target Start/End: Complemental strand, 21092 - 21051
Alignment:
Q  374 acatataattatactgaattatgtgattttctcaaactatta 415  Q
    |||||||||||||| || |||||||||||||||||| |||||    
T  21092 acatataattataccgacttatgtgattttctcaaattatta 21051  T

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Target: scaffold0044 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 414
Target Start/End: Complemental strand, 53226 - 53189
Alignment:
Q  377 tataattatactgaattatgtgattttctcaaactatt 414  Q
    |||||||| |||||||||||||||||||||||| ||||    
T  53226 tataattacactgaattatgtgattttctcaaattatt 53189  T

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Target: scaffold0008 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 418
Target Start/End: Original strand, 263385 - 263426
Alignment:
Q  377 tataattatactgaattatgtgattttctcaaactattagca 418  Q
    |||||||| ||||||||||||| |||||||||| ||||||||    
T  263385 tataattacactgaattatgtggttttctcaaattattagca 263426  T

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Target: scaffold0223 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 427
Target Start/End: Complemental strand, 20216 - 20168
Alignment:
Q  379 taattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    |||||| |||||||||||||||||| ||||| |||||||  ||||||||    
T  20216 taattacactgaattatgtgattttttcaaattattagctgtgtcggcg 20168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 427
Target Start/End: Complemental strand, 51855 - 51807
Alignment:
Q  379 taattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    |||||| |||||||||||||||||| ||||| |||||||  ||||||||    
T  51855 taattacactgaattatgtgattttttcaaattattagctgtgtcggcg 51807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 415
Target Start/End: Complemental strand, 130526 - 130490
Alignment:
Q  379 taattatactgaattatgtgattttctcaaactatta 415  Q
    |||||| |||||||||||||||||| |||||||||||    
T  130526 taattacactgaattatgtgattttttcaaactatta 130490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 427
Target Start/End: Complemental strand, 92851 - 92803
Alignment:
Q  379 taattatactgaattatgtgattttctcaaactattagcaatgtcggcg 427  Q
    |||||| |||||||||||| ||||||||||| |||||||  ||||||||    
T  92851 taattacactgaattatgtaattttctcaaattattagcggtgtcggcg 92803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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