View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8395_high_1 (Length: 1067)
Name: NF8395_high_1
Description: NF8395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8395_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 502; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 548 - 1061
Target Start/End: Original strand, 56232372 - 56232885
Alignment:
| Q |
548 |
agccggatgtaaccgcacccggtgtgaacattattgctgcgtactcaggagcgattagtcccacagaattggactttgataaacgtagggttcctttcat |
647 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56232372 |
agccggatgtaaccgcacccggtgtgaacattattgctgcgtactcaggagcgattagtcccacagaattggactttgataaacgtagggttcctttcat |
56232471 |
T |
|
| Q |
648 |
taccatgtctggaacatccatgtcatgtcctcatgtggctggagttgttggccttcttaagactctccaccccaactggagtccatccgctattaaatct |
747 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56232472 |
taccatgtctggaacatccatgtcatgtcctcatgtggctggagttgttggccttcttaagactctccaccccaactggagtccatccgctattaaatct |
56232571 |
T |
|
| Q |
748 |
gcaatcatgacaactggtaagttacctaacaccgttaggttactcatggaattattatatgattcattgagaattactctatctgataatatgatgtgtt |
847 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56232572 |
gcaatcatgacaactggtaagttacctaacaccgttaggttactcatggaattatgatatgattcattgagaattactctatctgataatatgatgtgtt |
56232671 |
T |
|
| Q |
848 |
ttctttcagctaggacaagggacaacactcataaacctatcctcgatgatactaatgtcaaggcaacaccatttgcttacggttctggtcacattagacc |
947 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56232672 |
ttctttcagctaggacaagggacaacactcacaaacctatcctcgatgatactaatgtcaaggcaacaccatttgcttacggttctggtcacattagacc |
56232771 |
T |
|
| Q |
948 |
aaatcgtgccatggatcctggcttggtctatgagttaaacatcaatgattacctaaactttctttgtttccttggttataaccaagcacaaattactatg |
1047 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56232772 |
aaatcgtgccatggatcctggcttggtctatgagttaaacatcaatgattacctaaactttctttgtttccttggttataaccaagcacaaattactatg |
56232871 |
T |
|
| Q |
1048 |
ttctctgctactcc |
1061 |
Q |
| |
|
||||||| |||||| |
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|
| T |
56232872 |
ttctctggtactcc |
56232885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 19 - 502
Target Start/End: Original strand, 56231839 - 56232326
Alignment:
| Q |
19 |
gctgaagcagttggaatgattctttgtaatgatcagtctaatggcaatgagcttattgctgatcctcatttcctgcctgcaacacagattacttatgcag |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
56231839 |
gctgaagcagttggaatgattctttgtaatgatcagtctaatggcaatgagcttattgctgatcctcatttcctacctgcaacacagattacttatgcag |
56231938 |
T |
|
| Q |
119 |
atggcgttgctctctttgcctacatcaattcaaccaagtaacttttgttgctctctccttttctcatcccttcatttgtatagttggtcttcatagataa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
56231939 |
atggcgttgctctctttgcctacatcaattcaaccaagtaacttttgttgctctctccttttctcatcccttcatttgtatagttggtcttcatagataa |
56232038 |
T |
|
| Q |
219 |
ttcaattatttcaacattgttctcttaacaccttacctttaatcaatgtcgttattatcacataacaggaatccactaggatatattcatccacccacaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
56232039 |
ttcaattatttcaacattgttctcttaacaccttacctttaatcaatgtcgttattatcacataacaggaatccactaggatatattcatccacccacaa |
56232138 |
T |
|
| Q |
319 |
caaagttgaacataaaacctgctccaagcatggcggctttctcctctagagggcctaacccaatcacaccagagatcctcaaggt----ctattctttca |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
56232139 |
caaagttgaacataaaacctgctccaagcatggcggctttctcctctagagggcctaacccaatcacaccagagatcctcaaggtttgcctattctttca |
56232238 |
T |
|
| Q |
415 |
ttattaatttcaaacattgcgtcataaatcatgctgcatattttgtttcctaacttagtattttccaaattacacgagttagtcgtag |
502 |
Q |
| |
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|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
56232239 |
ttattaatttcaaacattgcgtcataaatcatactacatattttgtttcctaacttagtattttccaaattacacgagttggtcgtag |
56232326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 253; Significance: 1e-140; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 23 - 485
Target Start/End: Original strand, 39189637 - 39190098
Alignment:
| Q |
23 |
aagcagttggaatgattctttgtaatgatcagtctaatggcaatgagcttattgctgatcctcatttcctgcctgcaacacagattacttatgcagatgg |
122 |
Q |
| |
|
||||||||||||||||||||| ||| |||| |||| ||||||||||||||| || ||||||||||||||| ||| || |||| |||| ||||| |||||| |
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|
| T |
39189637 |
aagcagttggaatgattctttttaacgatcggtctcatggcaatgagcttactgatgatcctcatttcctacctacagcacatattatttatgaagatgg |
39189736 |
T |
|
| Q |
123 |
cgttgctctctttgcctacatcaattcaaccaagtaacttttgttgctctctccttttctcatcccttcatttgtatagt--tggtcttcatagataatt |
220 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| | | ||||||||||||||| |
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|
| T |
39189737 |
tgttgctgtctttgcctacatcaattcaaccaagtaacttttgttgctc-ctccttttgtcatcccttcatttgctccctccttttcttcatagataatt |
39189835 |
T |
|
| Q |
221 |
caattatttcaacattgttctcttaacaccttacctttaatcaatgtcgttattatcacataacaggaatccactaggatatattcatccacccacaaca |
320 |
Q |
| |
|
|||||| ||||||||||||||||||||||| | |||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
39189836 |
caattaattcaacattgttctcttaacaccgt-----taattaatgtcgttattatcatataataggaatccactaggatatattcatccacccacaaca |
39189930 |
T |
|
| Q |
321 |
aagttgaacataaaacctgctccaagcatggcggctttctcctctagagggcctaacccaatcacaccagagatcctcaaggt----ctattctttcatt |
416 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
39189931 |
aagttgaaaataaaacctgctccaagcatggcggtcttctcctctagagggcctaacacaatcacaccagagatcctcaaggtttgcctattctttcatt |
39190030 |
T |
|
| Q |
417 |
attaatttcaaacattgcgtcataaatcatgctgcatattttgtttcctaacttagtattttccaaatt |
485 |
Q |
| |
|
|||||||||||||| || |||| ||||||| || |||||||| ||||||||| | |||||||||||||| |
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|
| T |
39190031 |
attaatttcaaaca-tgtgtcacaaatcatactacatattttatttcctaacatggtattttccaaatt |
39190098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 5e-96
Query Start/End: Original strand, 548 - 810
Target Start/End: Original strand, 39190187 - 39190449
Alignment:
| Q |
548 |
agccggatgtaaccgcacccggtgtgaacattattgctgcgtactcaggagcgattagtcccacagaattggactttgataaacgtagggttcctttcat |
647 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||| | |||||||||||||||||||||||| |
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|
| T |
39190187 |
agccagatgtaaccgcacccggtgtgaacattattgctgcctactcaggagcggttagtcccacaaaattggattctgataaacgtagggttcctttcat |
39190286 |
T |
|
| Q |
648 |
taccatgtctggaacatccatgtcatgtcctcatgtggctggagttgttggccttcttaagactctccaccccaactggagtccatccgctattaaatct |
747 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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|
| T |
39190287 |
gacaatgtctggaacatccatgtcatgccctcatgtggctggagtcgttggccttcttaagactctccaccccacctggagtccatcagctattaaatct |
39190386 |
T |
|
| Q |
748 |
gcaatcatgacaactggtaagttacctaacaccgttaggttactcatggaattattatatgat |
810 |
Q |
| |
|
|||||||||||||||||||||| | ||||| | |||| ||||||||| ||| || ||||||| |
|
|
| T |
39190387 |
gcaatcatgacaactggtaagtaatgtaacatcattagattactcatgaaatgatgatatgat |
39190449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 158; E-Value: 2e-83
Query Start/End: Original strand, 831 - 1052
Target Start/End: Original strand, 39190602 - 39190823
Alignment:
| Q |
831 |
tgataatatgatgtgttttctttcagctaggacaagggacaacactcataaacctatcctcgatgatactaatgtcaaggcaacaccatttgcttacggt |
930 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
39190602 |
tgataatatgatgtgttttctttcagctaggacaagggacaacactgttaaacctatcgttgatgatattaatgtcaaggcaacaccatttgactacggt |
39190701 |
T |
|
| Q |
931 |
tctggtcacattagaccaaatcgtgccatggatcctggcttggtctatgagttaaacatcaatgattacctaaactttctttgtttccttggttataacc |
1030 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||| | |||||||||| |
|
|
| T |
39190702 |
tctggtcacataagaccaaatcgtgccatggatcctggtttggtgtatgagttaaacatcaatgattacataaactttctttgtttcttaggttataacc |
39190801 |
T |
|
| Q |
1031 |
aagcacaaattactatgttctc |
1052 |
Q |
| |
|
|| ||||||||| |||||||| |
|
|
| T |
39190802 |
aaacacaaattagcatgttctc |
39190823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 402 - 482
Target Start/End: Original strand, 39218756 - 39218836
Alignment:
| Q |
402 |
gtctattctttcattattaatttcaaacattgcgtcataaatcatgctgcatattttgtttcctaacttagtattttccaa |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||||||| || |||||||| ||||||||| ||||||||||||| |
|
|
| T |
39218756 |
gtctattctttcattattaatttcaaacattgtgtcacaaatcatactacatattttatttcctaacatagtattttccaa |
39218836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 280 - 342
Target Start/End: Complemental strand, 11096813 - 11096751
Alignment:
| Q |
280 |
ataacaggaatccactaggatatattcatccacccacaacaaagttgaacataaaacctgctc |
342 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||| | |||||||||||| |||||| ||||||| |
|
|
| T |
11096813 |
ataacaagaatccactaggatacattcatccactctcaacaaagttgagcataaagcctgctc |
11096751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 143
Target Start/End: Complemental strand, 43014434 - 43014361
Alignment:
| Q |
70 |
cttattgctgatcctcatttcctgcctgcaacacagattacttatgcagatggcgttgctctctttgcctacat |
143 |
Q |
| |
|
||||||||||||||| ||||| || | ||| ||||||||| ||||| |||||| |||||| | ||||||||||| |
|
|
| T |
43014434 |
cttattgctgatcctaatttcttgtcagcatcacagattaattatgaagatggtgttgctgtgtttgcctacat |
43014361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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