View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8395_high_16 (Length: 239)

Name: NF8395_high_16
Description: NF8395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8395_high_16
NF8395_high_16
[»] chr5 (1 HSPs)
chr5 (80-225)||(4554057-4554202)
[»] chr6 (1 HSPs)
chr6 (129-225)||(9574220-9574316)
[»] scaffold1037 (1 HSPs)
scaffold1037 (80-167)||(2562-2648)
[»] scaffold1031 (1 HSPs)
scaffold1031 (80-167)||(2681-2767)
[»] chr2 (1 HSPs)
chr2 (134-225)||(5277040-5277131)
[»] chr1 (2 HSPs)
chr1 (138-222)||(17494770-17494854)
chr1 (129-225)||(37874604-37874700)
[»] chr8 (5 HSPs)
chr8 (80-167)||(216696-216782)
chr8 (80-167)||(693256-693342)
chr8 (80-167)||(697465-697551)
chr8 (80-167)||(730319-730405)
chr8 (80-167)||(854214-854300)
[»] chr4 (2 HSPs)
chr4 (80-175)||(43738125-43738219)
chr4 (129-213)||(55159478-55159562)


Alignment Details
Target: chr5 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 80 - 225
Target Start/End: Original strand, 4554057 - 4554202
Alignment:
Q  80 ccaatcttttcttcctacaaggtcagatctggaacatcaaaacaaccagaacaaattcggatttgaaaaactaccacaacaaacttcattgtattttcta 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4554057 ccaatcttttcttcctacaaggtcagatctggaacatcaaaacaacaagaacaaattcggatttgaaaaactaccacaacaaacttcattgtattttcta 4554156  T
Q  180 aaatttgcatatgccaaggcaacaaacaagaagagaactaaaattg 225  Q
    |||||||||  |||||||||||||||||||||||||||||||||||    
T  4554157 aaatttgcaactgccaaggcaacaaacaagaagagaactaaaattg 4554202  T

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Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 129 - 225
Target Start/End: Complemental strand, 9574316 - 9574220
Alignment:
Q  129 aacaaattcggatttgaaaaactaccacaacaaacttcattgtattttctaaaatttgcatatgccaaggcaacaaacaagaagagaactaaaattg 225  Q
    |||| |||||||| |||||||  |||||||||||||||||| ||| |||| ||||||||||  |||||  |||||||||||||||||| ||||||||    
T  9574316 aacagattcggatatgaaaaatcaccacaacaaacttcattttatcttctgaaatttgcatcggccaatacaacaaacaagaagagaaataaaattg 9574220  T

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Target: scaffold1037 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold1037
Description:

Target: scaffold1037; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 80 - 167
Target Start/End: Complemental strand, 2648 - 2562
Alignment:
Q  80 ccaatcttttcttcctacaaggtcagatctggaacatcaaaacaaccagaacaaattcggatttgaaaaactaccacaacaaacttca 167  Q
    ||||||||||||||||| ||| | ||||||||||||||| ||||| || ||||||||||||| |||||||| |||||||||| |||||    
T  2648 ccaatcttttcttcctaaaagttgagatctggaacatcacaacaa-caaaacaaattcggatctgaaaaaccaccacaacaagcttca 2562  T

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Target: scaffold1031 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold1031
Description:

Target: scaffold1031; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 80 - 167
Target Start/End: Complemental strand, 2767 - 2681
Alignment:
Q  80 ccaatcttttcttcctacaaggtcagatctggaacatcaaaacaaccagaacaaattcggatttgaaaaactaccacaacaaacttca 167  Q
    ||||||||||||||||| ||| | ||||||||||||||| ||||| || ||||||||||||| |||||||| |||||||||| |||||    
T  2767 ccaatcttttcttcctaaaagttgagatctggaacatcacaacaa-caaaacaaattcggatctgaaaaaccaccacaacaagcttca 2681  T

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Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 134 - 225
Target Start/End: Complemental strand, 5277131 - 5277040
Alignment:
Q  134 attcggatttgaaaaactaccacaacaaacttcattgtattttctaaaatttgcatatgccaaggcaacaaacaagaagagaactaaaattg 225  Q
    |||||||| |||||||  |||||||||| ||||||| |||||||| ||||||||||  |||||  |||||||||||||||||| ||||||||    
T  5277131 attcggatctgaaaaatcaccacaacaagcttcattttattttctgaaatttgcatcggccaatacaacaaacaagaagagaaataaaattg 5277040  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 222
Target Start/End: Original strand, 17494770 - 17494854
Alignment:
Q  138 ggatttgaaaaactaccacaacaaacttcattgtattttctaaaatttgcatatgccaaggcaacaaacaagaagagaactaaaa 222  Q
    ||||||| ||||| | |||||||| ||||||||||||||||||||||| |||   ||||| ||||||| |||||||||| |||||    
T  17494770 ggatttggaaaaccatcacaacaagcttcattgtattttctaaaattttcatcgaccaagacaacaaataagaagagaaataaaa 17494854  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 225
Target Start/End: Complemental strand, 37874700 - 37874604
Alignment:
Q  129 aacaaattcggatttgaaaaactaccacaacaaacttcattgtattttctaaaatttgcatatgccaaggcaacaaacaagaagagaactaaaattg 225  Q
    |||| ||||| || |||||||  |||||||||| ||||||| ||| |||| ||||||||||  |||||  |||||||||||||||||| ||||||||    
T  37874700 aacatattcgaatctgaaaaatcaccacaacaagcttcattttatcttctgaaatttgcatcggccaatacaacaaacaagaagagaaataaaattg 37874604  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 80 - 167
Target Start/End: Original strand, 216696 - 216782
Alignment:
Q  80 ccaatcttttcttcctacaaggtcagatctggaacatcaaaacaaccagaacaaattcggatttgaaaaactaccacaacaaacttca 167  Q
    ||||||||||||||||| ||| | ||||||||||||||| ||||| || |||||||| |||| || ||||| |||||||||| |||||    
T  216696 ccaatcttttcttcctaaaagttgagatctggaacatcacaacaa-caaaacaaatttggatctggaaaaccaccacaacaagcttca 216782  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 80 - 167
Target Start/End: Original strand, 693256 - 693342
Alignment:
Q  80 ccaatcttttcttcctacaaggtcagatctggaacatcaaaacaaccagaacaaattcggatttgaaaaactaccacaacaaacttca 167  Q
    ||||||||||||||||| ||| | ||||||||||||||| ||||| || |||||||| |||| || ||||| |||||||||| |||||    
T  693256 ccaatcttttcttcctaaaagttgagatctggaacatcacaacaa-caaaacaaatttggatctggaaaaccaccacaacaagcttca 693342  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 80 - 167
Target Start/End: Original strand, 697465 - 697551
Alignment:
Q  80 ccaatcttttcttcctacaaggtcagatctggaacatcaaaacaaccagaacaaattcggatttgaaaaactaccacaacaaacttca 167  Q
    ||||||||||||||||| ||| | ||||||||||||||| ||||| || |||||||| |||| || ||||| |||||||||| |||||    
T  697465 ccaatcttttcttcctaaaagttgagatctggaacatcacaacaa-caaaacaaatttggatctggaaaaccaccacaacaagcttca 697551  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 80 - 167
Target Start/End: Original strand, 730319 - 730405
Alignment:
Q  80 ccaatcttttcttcctacaaggtcagatctggaacatcaaaacaaccagaacaaattcggatttgaaaaactaccacaacaaacttca 167  Q
    ||||||||||||||||| ||| | ||||||||||||||| ||||| || |||||||| |||| || ||||| |||||||||| |||||    
T  730319 ccaatcttttcttcctaaaagttgagatctggaacatcacaacaa-caaaacaaatttggatctggaaaaccaccacaacaagcttca 730405  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 80 - 167
Target Start/End: Original strand, 854214 - 854300
Alignment:
Q  80 ccaatcttttcttcctacaaggtcagatctggaacatcaaaacaaccagaacaaattcggatttgaaaaactaccacaacaaacttca 167  Q
    ||||||||||||||||| ||| | ||||||||||||||| ||||| || |||||||| |||| || ||||| |||||||||| |||||    
T  854214 ccaatcttttcttcctaaaagttgagatctggaacatcacaacaa-caaaacaaatttggatctggaaaaccaccacaacaagcttca 854300  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 80 - 175
Target Start/End: Complemental strand, 43738219 - 43738125
Alignment:
Q  80 ccaatcttttcttcctacaaggtcagatctggaacatcaaaacaaccagaacaaattcggatttgaaaaactaccacaacaaacttcattgtattt 175  Q
    ||||||||||||||||| ||| | ||||||||||||||| ||||| || || ||||||| || || ||||| |||||||||| ||||| |||||||    
T  43738219 ccaatcttttcttcctaaaagttgagatctggaacatcacaacaa-caaaataaattcgtatctggaaaaccaccacaacaagcttcactgtattt 43738125  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 213
Target Start/End: Original strand, 55159478 - 55159562
Alignment:
Q  129 aacaaattcggatttgaaaaactaccacaacaaacttcattgtattttctaaaatttgcatatgccaaggcaacaaacaagaaga 213  Q
    |||| |||| ||| |||||||  |||||||||| ||||||| ||| |||| ||||||||||  |||||  |||||||||||||||    
T  55159478 aacagattcagatctgaaaaatcaccacaacaagcttcattttatcttctgaaatttgcatcggccaatacaacaaacaagaaga 55159562  T

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