View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8395_high_3 (Length: 616)
Name: NF8395_high_3
Description: NF8395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8395_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 1 - 598
Target Start/End: Complemental strand, 38710797 - 38710209
Alignment:
| Q |
1 |
tgagtccccaaaatacatgaacttttgcgacagtaccaaagcggctgaagacctcttctacttccttctcactataacaaaagtttatacatctagatat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38710797 |
tgagtccccaaaatacatgaacttttgcgacagtaccaaagcggcttaagacctcttctacttccttctcactataacaaaagtttatacatctagatat |
38710698 |
T |
|
| Q |
101 |
tagtaaagcagataattaaattgttgaaattaagaatcattctttcttcgaaaagnnnnnnnnntgcatacgtacgtggttgtaaatggcagattatgga |
200 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
38710697 |
tagtaaagcagataatt-----gttgaaattaagaatcattctttcttcgaaaagaaaaaaaaatgcatacgtacgtggttgtaaatggcagattatgga |
38710603 |
T |
|
| Q |
201 |
caaaaacagtcaagagtgatnnnnnnnnctctttatgttattttctcctggagttgatgataactggacatcccatcgatcgacatcttcttcggcctct |
300 |
Q |
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||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38710602 |
caaaaacagtcgagagtgataaaaaa--ctctt-atgttattttctcctggagttgatgataactggacatcccatcgatcgacatcttcttcggcctct |
38710506 |
T |
|
| Q |
301 |
agatccaaaccactatttgcatcaccaaattccaaagtcagctgcttgcgtgataaagaaaataataaagtgcttttggtccattaacttaatttcagat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38710505 |
agatccaaaccactatttgcatcaccaaattccaaagtcagctgcttgcgtgat-aagaaaataataaagtgattttggtccattaacttaatttcagat |
38710407 |
T |
|
| Q |
401 |
aacaatttggtatttcatcnnnnnnnnncatgttattttgatccaaggtttcaaatgtttcctctcggcctttcccattttttcaagttgtgggaattca |
500 |
Q |
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| T |
38710406 |
aacaatttggtatttcatctttttttttcatgttattttgatccaaggtttcaaatgtttcctctcggcctttcccattttttcaagttgtgggaattca |
38710307 |
T |
|
| Q |
501 |
taaaaaagggtcaccacattccatatggcaaacatttgacaatctatcaaataattactcaatgagattgtcgttactttcctcgttgtcgccatagc |
598 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
38710306 |
taaaaaagggtcaccacattccatatggcaaacgtttgacaatctatcaaataattactcaatgagatcgtcgttactttcctcgttgtcgccatagc |
38710209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 373 - 411
Target Start/End: Original strand, 684965 - 685003
Alignment:
| Q |
373 |
cttttggtccattaacttaatttcagataacaatttggt |
411 |
Q |
| |
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||||| |||| |||||||||||||||||||||||||||| |
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| T |
684965 |
cttttagtcccttaacttaatttcagataacaatttggt |
685003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 373 - 411
Target Start/End: Complemental strand, 11362082 - 11362044
Alignment:
| Q |
373 |
cttttggtccattaacttaatttcagataacaatttggt |
411 |
Q |
| |
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||||| |||| |||||||||||||||||||||||||||| |
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| T |
11362082 |
cttttcgtcccttaacttaatttcagataacaatttggt |
11362044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 373 - 411
Target Start/End: Original strand, 25061313 - 25061351
Alignment:
| Q |
373 |
cttttggtccattaacttaatttcagataacaatttggt |
411 |
Q |
| |
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|||||||||| ||||||||||||||| |||||||||||| |
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| T |
25061313 |
cttttggtcccttaacttaatttcaggtaacaatttggt |
25061351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 373 - 411
Target Start/End: Complemental strand, 32809421 - 32809383
Alignment:
| Q |
373 |
cttttggtccattaacttaatttcagataacaatttggt |
411 |
Q |
| |
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|||||||||||||||||||||||||| ||||| |||||| |
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| T |
32809421 |
cttttggtccattaacttaatttcaggtaacagtttggt |
32809383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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