View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8395_high_5 (Length: 453)
Name: NF8395_high_5
Description: NF8395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8395_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 18 - 445
Target Start/End: Complemental strand, 41032729 - 41032305
Alignment:
| Q |
18 |
acactaacatatgtgtcagacaccgaacacgcctataatctgaagaagtgtcagtgctacatagaagagacgtaagtacatttttgtgcatcataaaatg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41032729 |
acactaacatatgtgtcagacaccgaacatgcctataatctgaag---tgtcagtgctacataaaagagacgtaagtacatttttgtgcgtcataaaatg |
41032633 |
T |
|
| Q |
118 |
ttagagcttgatttattgccaacttgagatcgatagacgagtcttgatgtttgtgcttttgaggtaaaaagtgcaccagaagagccactgctacgactgc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41032632 |
ttagagcttgatttattgccaacttgagatcgatagacgagtcttgatgtttatgcttttgaggtaaaaagtgcaccagaagagccactgctacaactgc |
41032533 |
T |
|
| Q |
218 |
aaaaaatattgctactgtaacaaaaataaaaatatggaagtatttcttatcagtgatgaccagattgcagtcaacagattttggatattgggaagggatg |
317 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41032532 |
aaaaaatattgctactataacaaaaataaaaatatggaagtatttcttatcagtgatgaccagattgcagtcaacagattttggatattgggaagggatg |
41032433 |
T |
|
| Q |
318 |
gactcataagaagcagaaaactttggagtaaggttgaaatcaagtgctatggcgttccagcgacttgatgaagggagaagtcgacctgcttctgaaactg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41032432 |
gactcataagaagcagaaaactttggagtaaggttgaaatcaagtgctatggcgttccagcggcttgatgaagggagaagtcgacctgcttctgaaactg |
41032333 |
T |
|
| Q |
418 |
tatgcatatatcttacaggattcttctc |
445 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
41032332 |
tatgcatatatcttacaggattcttctc |
41032305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University