View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8395_high_6 (Length: 382)
Name: NF8395_high_6
Description: NF8395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8395_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 22 - 347
Target Start/End: Original strand, 48305563 - 48305875
Alignment:
| Q |
22 |
atggaaaaacacacggtcaagggggctttaatcggtgattgaatattgcacgactcgtattctgacttcactaaattggttttaaaatacatcttagaat |
121 |
Q |
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| T |
48305563 |
atggaaaaacacacggtcaagggggcttcaatcggtgattgaatattgcacgactcgtattccgacttcactaaattggttttaaaatacatcttagaat |
48305662 |
T |
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| Q |
122 |
atgagtcgtcttctaatagttgagatctgctattgtctgactgtaaagaatccaaatgcaaacataagaggataacaaaagagggataacctggcatggg |
221 |
Q |
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| T |
48305663 |
atgagtcgtcttctaatagttgagatctgctattgtctgactgtaaagaatccgaatgcaaacat-------------aagagggataacctggcaaggg |
48305749 |
T |
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| Q |
222 |
catgtgcaagtttgggatatgatatattgttgcttgattatggtatatacaattttatgtatcttaaaattgtcactctggggctagtctgcatgttaag |
321 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48305750 |
catgtgcaagtctgggatatgatatattgttgcttgattatggtatatacaattttatgtatcttaaaattgtcactctggggctagtctgcatgttaag |
48305849 |
T |
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| Q |
322 |
cgtatcagtcttgtatattttttgtt |
347 |
Q |
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|||||||||||||||||||||||||| |
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| T |
48305850 |
cgtatcagtcttgtatattttttgtt |
48305875 |
T |
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