View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8395_high_7 (Length: 378)

Name: NF8395_high_7
Description: NF8395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8395_high_7
NF8395_high_7
[»] chr3 (2 HSPs)
chr3 (1-361)||(36743878-36744243)
chr3 (223-255)||(35722340-35722372)
[»] chr8 (12 HSPs)
chr8 (218-317)||(6392095-6392194)
chr8 (218-353)||(6364472-6364607)
chr8 (218-353)||(7460671-7460806)
chr8 (221-353)||(6290510-6290642)
chr8 (218-353)||(6353599-6353734)
chr8 (218-304)||(6411259-6411345)
chr8 (218-294)||(6264930-6265006)
chr8 (218-294)||(6425289-6425365)
chr8 (218-294)||(6275755-6275831)
chr8 (218-333)||(6333183-6333298)
chr8 (218-333)||(6371303-6371418)
chr8 (208-246)||(6458252-6458290)
[»] chr2 (1 HSPs)
chr2 (212-292)||(42694385-42694465)
[»] chr1 (1 HSPs)
chr1 (109-231)||(36923579-36923701)


Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 36744243 - 36743878
Alignment:
Q  1 taatgaatcatcatataaataatatatattcattagtaaaaagtttcaattatatattactaagaaaa-----agttgagagcaattaacgtagagatta 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||    
T  36744243 taatgaatcatcatataaataatatatattcattagtaaaaagtttcaattatatattactaagaaaagaaaaagttgagagcaattaacgtagagatta 36744144  T
Q  96 actaactaactaactaacctgttttggtcggttttctgcaggttcttcccctgcgaggatagggaaatttagaagaacctccgagaatcggacgagcaag 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  36744143 actaactaactaactaacctgttttggtcggttttctgcaggttcttcccctacgaggatagggaaatttagaagaacctccgagaatcggacgagcaag 36744044  T
Q  196 gtctcgactcttatctggatttcccaaatcattgtaaacatcataatcatagattctgtcccattcctcacgctttgctgttccatctccccttaaagta 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36744043 gtctcgactcttatctggatttcccaaatcattgtaaacatcataatcatagattctgtcccattcctcacgctttgctgttccatctccccttaaagta 36743944  T
Q  296 tccaattctacatgtctgtagttaactagtggagctggcatttcatgtggaaggtatggctgcaac 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36743943 tccaattctacatgtctgtagttaactagtggagctggcatttcatgtggaaggtatggctgcaac 36743878  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 255
Target Start/End: Complemental strand, 35722372 - 35722340
Alignment:
Q  223 atcattgtaaacatcataatcatagattctgtc 255  Q
    ||||||||| |||||||||||||||||||||||    
T  35722372 atcattgtagacatcataatcatagattctgtc 35722340  T

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Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 218 - 317
Target Start/End: Original strand, 6392095 - 6392194
Alignment:
Q  218 cccaaatcattgtaaacatcataatcatagattctgtcccattcctcacgctttgctgttccatctccccttaaagtatccaattctacatgtctgtagt 317  Q
    |||||||||||||| |||||||||||||| |||||||||||||||| ||||| | | ||||||||||| |||||||||| ||||||| | ||||||||||    
T  6392095 cccaaatcattgtagacatcataatcatatattctgtcccattccttacgctctccagttccatctcctcttaaagtattcaattcttcttgtctgtagt 6392194  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 218 - 353
Target Start/End: Original strand, 6364472 - 6364607
Alignment:
Q  218 cccaaatcattgtaaacatcataatcatagattctgtcccattcctcacgctttgctgttccatctccccttaaagtatccaattctacatgtctgtagt 317  Q
    |||||||||||||| |||||||||||||| ||||| |||||||||| ||||| | | ||||||||||| |||||||| | ||||||| | ||||||||||    
T  6364472 cccaaatcattgtagacatcataatcatatattctttcccattccttacgctctccagttccatctcctcttaaagtcttcaattcttcttgtctgtagt 6364571  T
Q  318 taactagtggagctggcatttcatgtggaaggtatg 353  Q
      ||||  ||||||||  |||||  |||||||||||    
T  6364572 agactaaaggagctggtgtttcacttggaaggtatg 6364607  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 218 - 353
Target Start/End: Original strand, 7460671 - 7460806
Alignment:
Q  218 cccaaatcattgtaaacatcataatcatagattctgtcccattcctcacgctttgctgttccatctccccttaaagtatccaattctacatgtctgtagt 317  Q
    ||||| |||||||| |||||||||||||| ||||||||||||||||  |||| | | ||||||||||| |||||||| | ||||||| | ||||||||||    
T  7460671 cccaagtcattgtagacatcataatcatatattctgtcccattccttgcgctctcccgttccatctcctcttaaagtcttcaattcttcttgtctgtagt 7460770  T
Q  318 taactagtggagctggcatttcatgtggaaggtatg 353  Q
      |||| |||||||||  || ||  |||||||||||    
T  7460771 acactaatggagctggtgttgcacttggaaggtatg 7460806  T

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Target: chr8; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 221 - 353
Target Start/End: Original strand, 6290510 - 6290642
Alignment:
Q  221 aaatcattgtaaacatcataatcatagattctgtcccattcctcacgctttgctgttccatctccccttaaagtatccaattctacatgtctgtagttaa 320  Q
    ||||||||||| ||||| |||||||| ||||| ||||||||||  |||| | ||||||||||||| |||||||| | ||||||| | ||||| ||||  |    
T  6290510 aaatcattgtagacatcgtaatcatatattctttcccattccttgcgctctcctgttccatctcctcttaaagtcttcaattcttcttgtctatagtaca 6290609  T
Q  321 ctagtggagctggcatttcatgtggaaggtatg 353  Q
    ||| |||||||||  |||||  |||||||||||    
T  6290610 ctaatggagctggtgtttcacttggaaggtatg 6290642  T

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Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 218 - 353
Target Start/End: Original strand, 6353599 - 6353734
Alignment:
Q  218 cccaaatcattgtaaacatcataatcatagattctgtcccattcctcacgctttgctgttccatctccccttaaagtatccaattctacatgtctgtagt 317  Q
    |||||||||||||| ||||| |||||||| ||||| ||||||||||  |||| | | ||||||||||| |||||||| | ||||||| | ||||||||||    
T  6353599 cccaaatcattgtagacatcgtaatcatatattctttcccattccttgcgctctccagttccatctcctcttaaagtcttcaattcttcttgtctgtagt 6353698  T
Q  318 taactagtggagctggcatttcatgtggaaggtatg 353  Q
      |||| |||||| ||  |||||  |||||||||||    
T  6353699 acactaatggagccggtgtttcacttggaaggtatg 6353734  T

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Target: chr8; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 218 - 304
Target Start/End: Original strand, 6411259 - 6411345
Alignment:
Q  218 cccaaatcattgtaaacatcataatcatagattctgtcccattcctcacgctttgctgttccatctccccttaaagtatccaattct 304  Q
    |||||||||||||| |||||||||||||| |||||||||||| ||| ||||| | | ||||||||||| |||||||| | |||||||    
T  6411259 cccaaatcattgtagacatcataatcatatattctgtcccataccttacgctctccagttccatctcctcttaaagtcttcaattct 6411345  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 218 - 294
Target Start/End: Original strand, 6264930 - 6265006
Alignment:
Q  218 cccaaatcattgtaaacatcataatcatagattctgtcccattcctcacgctttgctgttccatctccccttaaagt 294  Q
    ||||||||||||||||||||||||||||| | |||||||||||| |  ||||   | ||||||||||| ||||||||    
T  6264930 cccaaatcattgtaaacatcataatcataaactctgtcccattctttgcgctcccccgttccatctcctcttaaagt 6265006  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 218 - 294
Target Start/End: Original strand, 6425289 - 6425365
Alignment:
Q  218 cccaaatcattgtaaacatcataatcatagattctgtcccattcctcacgctttgctgttccatctccccttaaagt 294  Q
    |||||||||||||| ||||| ||||||||||| || ||||||||||  |||| | || |||||||||| ||||||||    
T  6425289 cccaaatcattgtagacatcgtaatcatagatcctttcccattccttgcgctctccttttccatctcctcttaaagt 6425365  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 294
Target Start/End: Original strand, 6275755 - 6275831
Alignment:
Q  218 cccaaatcattgtaaacatcataatcatagattctgtcccattcctcacgctttgctgttccatctccccttaaagt 294  Q
    |||| ||||||||| ||||| || |||||||| || |||||||| | ||||| | ||||||||||||| ||||||||    
T  6275755 cccacatcattgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccatctcctcttaaagt 6275831  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 218 - 333
Target Start/End: Original strand, 6333183 - 6333298
Alignment:
Q  218 cccaaatcattgtaaacatcataatcatagattctgtcccattcctcacgctttgctgttccatctccccttaaagtatccaattctacatgtctgtagt 317  Q
    ||||| |||||||||||||| || |||||||| || ||| |||| |  ||||   | ||||||||||| |||||||| | ||||||| | ||||||||||    
T  6333183 cccaagtcattgtaaacatcgtagtcatagatcctatccgattctttgcgctcacccgttccatctcctcttaaagtcttcaattcttcttgtctgtagt 6333282  T
Q  318 taactagtggagctgg 333  Q
      |||| |||||||||    
T  6333283 agactaatggagctgg 6333298  T

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Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 218 - 333
Target Start/End: Original strand, 6371303 - 6371418
Alignment:
Q  218 cccaaatcattgtaaacatcataatcatagattctgtcccattcctcacgctttgctgttccatctccccttaaagtatccaattctacatgtctgtagt 317  Q
    |||||||||||||| ||||| || |||||||| || |||||||| |  ||||   | ||||||||||| |||||||| | ||| ||| | ||||||||||    
T  6371303 cccaaatcattgtagacatcgtagtcatagatcctatcccattctttgcgctcacccgttccatctcctcttaaagtcttcaactcttcttgtctgtagt 6371402  T
Q  318 taactagtggagctgg 333  Q
      |||| |||||||||    
T  6371403 agactaatggagctgg 6371418  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 246
Target Start/End: Original strand, 6458252 - 6458290
Alignment:
Q  208 atctggatttcccaaatcattgtaaacatcataatcata 246  Q
    ||||||||||||||||||||| |||| ||||||||||||    
T  6458252 atctggatttcccaaatcattataaatatcataatcata 6458290  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 212 - 292
Target Start/End: Original strand, 42694385 - 42694465
Alignment:
Q  212 ggatttcccaaatcattgtaaacatcataatcatagattctgtcccattcctcacgctttgctgttccatctccccttaaa 292  Q
    |||||||| ||||||||||| |||||||||||||||||||| |||||||| |  || | | ||||||||||||| ||||||    
T  42694385 ggatttcctaaatcattgtagacatcataatcatagattctttcccattctttgcgttctcctgttccatctcctcttaaa 42694465  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 231
Target Start/End: Complemental strand, 36923701 - 36923579
Alignment:
Q  109 ctaacctgttttggtcggttttctgcaggttcttcccctgcgaggatagggaaatttagaagaacctccgagaatcggacgagcaaggtctcgactctta 208  Q
    |||||||| |||||  |||| |||||  ||||||||||||||||| || ||| ||| || ||| ||||| ||||| ||||||| | | ||  |||  |||    
T  36923701 ctaacctgatttggcaggttctctgccagttcttcccctgcgagggtaaggatattcagcagaccctccaagaataggacgagaatgttcaagaccttta 36923602  T
Q  209 tctggatttcccaaatcattgta 231  Q
    || ||||||||||||||||||||    
T  36923601 tcaggatttcccaaatcattgta 36923579  T

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