View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8395_low_12 (Length: 252)
Name: NF8395_low_12
Description: NF8395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8395_low_12 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0246 (1 HSPs) |
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| [»] scaffold0048 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 13 - 252
Target Start/End: Original strand, 44846290 - 44846529
Alignment:
| Q |
13 |
cagagatggtggttggatcccttattgtgtttgggtcttgactgaccttattatcttgtaaatactttgtaagacggattgtcttttgggatggcctatt |
112 |
Q |
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|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
44846290 |
cagagatgatggttggaccccttattgtgtttgggtcttgactgaccttattatcttgtaaatactttgtaagacggattgtcttttgggatggcctctt |
44846389 |
T |
|
| Q |
113 |
tggtacaacttatactatggagttttcatcgtcattgttaatatatcccattttaatttcttnnnnnnnnnnnnnnttataatttcattaaccattatct |
212 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
44846390 |
tgatacaacttatactatggagttttcatcgtcattgttaatatatcccattttaatttcttaaaaaaaaaattatttataatttcattaaccattatct |
44846489 |
T |
|
| Q |
213 |
ctaggacatctataaaatttagtaaaacttatttttattg |
252 |
Q |
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|| ||| ||||||||||||||||||||||||||||||||| |
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| T |
44846490 |
ctgggatatctataaaatttagtaaaacttatttttattg |
44846529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0246 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0246
Description:
Target: scaffold0246; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 13 - 174
Target Start/End: Complemental strand, 21729 - 21570
Alignment:
| Q |
13 |
cagagatggtggttggatcccttattgtgtttgggtcttgactgaccttattatcttgtaaatactttgtaagacggattgtcttttgggatggcctatt |
112 |
Q |
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||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||| || |
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| T |
21729 |
cagagatggtggtcggaccccttattgtgtttgggtcttgactgacattattatcttgtaaatactttgtaagacgggttgtcttttggggtgg-ctccg |
21631 |
T |
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| Q |
113 |
tggtacaacttatactatggagttttcatcgtcattgttaatatatcccattttaatttctt |
174 |
Q |
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| ||||||||| ||||| ||| |||||||| ||||||||||||||| |||||| ||||||| |
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| T |
21630 |
tagtacaacttgtactagagag-tttcatcgccattgttaatatatcacattttgatttctt |
21570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 13 - 174
Target Start/End: Complemental strand, 40483790 - 40483631
Alignment:
| Q |
13 |
cagagatggtggttggatcccttattgtgtttgggtcttgactgaccttattatcttgtaaatactttgtaagacggattgtcttttgggatggcctatt |
112 |
Q |
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||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||| || |
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| T |
40483790 |
cagagatggtggtcggaccccttattgtgtttgggtcttgactgacattattatcttgtaaatactttgtaagacgggttgtcttttggggtgg-ctccg |
40483692 |
T |
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| Q |
113 |
tggtacaacttatactatggagttttcatcgtcattgttaatatatcccattttaatttctt |
174 |
Q |
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| ||||||||| ||||| ||| |||||||| ||||||||||||||| |||||| ||||||| |
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| T |
40483691 |
tagtacaacttgtactagagag-tttcatcgccattgttaatatatcacattttgatttctt |
40483631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 174
Target Start/End: Complemental strand, 42272566 - 42272406
Alignment:
| Q |
13 |
cagagatggtggttggatcccttattgtgtttgggtcttgactgaccttattatcttgtaaatactttgtaagacggattgtcttttgggatggcctatt |
112 |
Q |
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||||||||||||| ||| |||||| | |||||||||||||| ||| ||| | || ||||| |||||||||| |||| |||||||||||| ||| || || |
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| T |
42272566 |
cagagatggtggtcggaccccttagtatgtttgggtcttgattgatctt-tcattttgtatatactttgtatgacgctttgtcttttggggtggtctctt |
42272468 |
T |
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| Q |
113 |
tggtacaacttatactatggagttttcatcgtcattgttaatatatcccattttaatttctt |
174 |
Q |
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||||||| ||| ||||| |||| | ||| || |||||||||||||| |||||| ||||||| |
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| T |
42272467 |
tggtacatcttgtactagggagctctcaccgccattgttaatatatttcattttgatttctt |
42272406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 174
Target Start/End: Original strand, 24976069 - 24976140
Alignment:
| Q |
104 |
tggcctatttggtacaacttatactatggagtttt-catcgtcattgttaatatatcccattttaatttctt |
174 |
Q |
| |
|
|||| ||||||||||| ||| ||||| ||||| || | ||| | |||||||||||||||||||||||||||| |
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| T |
24976069 |
tggcttatttggtacaccttgtactaaggagtattacgtcgccgttgttaatatatcccattttaatttctt |
24976140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 174
Target Start/End: Complemental strand, 4939367 - 4939212
Alignment:
| Q |
18 |
atggtggttggatcccttattgtgtttgggtcttgactgaccttattatcttgtaaatactttgtaagacggattgtcttttgggatggcctatttggta |
117 |
Q |
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|||||| | |||| |||||||||||||||||||||||||||||| ||||||| || |||||||||||||| | ||| ||||||||||||||| | | || |
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| T |
4939367 |
atggtgttcggattccttattgtgtttgggtcttgactgacctttttatcttatacatactttgtaagacagcttg-cttttgggatggcctctctaata |
4939269 |
T |
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| Q |
118 |
caacttatactatggagttttcatcgtcattgttaatatatcccattttaatttctt |
174 |
Q |
| |
|
|||||| ||||| |||| | |||||| ||||||||||||||| |||||| ||||||| |
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| T |
4939268 |
caacttgtactagggagctctcatcgccattgttaatatatctcattttgatttctt |
4939212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 109
Target Start/End: Complemental strand, 36379681 - 36379585
Alignment:
| Q |
13 |
cagagatggtggttggatcccttattgtgtttgggtcttgactgaccttattatcttgtaaatactttgtaagacggattgtcttttgggatggcct |
109 |
Q |
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||||||||||||| ||||| |||||||| |||||||||||||||| ||| ||||||||| |||||||||||||||| |||||||||||| |||||| |
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| T |
36379681 |
cagagatggtggtcggatctcttattgtatttgggtcttgactgatctttttatcttgtgtatactttgtaagacggtttgtcttttggggtggcct |
36379585 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 174
Target Start/End: Original strand, 19015187 - 19015343
Alignment:
| Q |
16 |
agatggtggttggatcccttattgtgtttgggtcttgactgaccttattatcttgtaaatactttgtaagacggattgtcttttgggatggcctatttgg |
115 |
Q |
| |
|
|||||||||| | | |||||| | ||||||||||| |||||| ||| |||| |||| |||||||||||||||| ||||||||||| ||| || |||| |
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| T |
19015187 |
agatggtggtcgaaccccttaatatgtttgggtctagactgatctttttat--tgtatatactttgtaagacggtttgtcttttggagtggtctctttga |
19015284 |
T |
|
| Q |
116 |
tacaacttatactatggagttttcatcgtcattgttaatatatcccattttaatttctt |
174 |
Q |
| |
|
|||| ||| ||||| |||| | ||| || |||| |||||||||| |||||| ||||||| |
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|
| T |
19015285 |
tacatcttgtactagggagctctcaccgccattattaatatatctcattttgatttctt |
19015343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 174
Target Start/End: Complemental strand, 28357427 - 28357363
Alignment:
| Q |
111 |
tttggtacaacttatactatggagtttt-catcgtcattgttaatatatcccattttaatttctt |
174 |
Q |
| |
|
||||||||| ||| |||| |||||||| || || | |||||||||||||||||||||||||||| |
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| T |
28357427 |
tttggtacaccttgtacttaggagttttacaccgccgttgttaatatatcccattttaatttctt |
28357363 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 174
Target Start/End: Complemental strand, 8384435 - 8384275
Alignment:
| Q |
13 |
cagagatggtggttggatcccttattgtgtttgggtcttgactgaccttattatcttgtaaatactttgtaagacggattgtcttttgggatggcctatt |
112 |
Q |
| |
|
||||||||||||| ||| |||||||| ||||| |||||||||||| ||| |||||||||| ||||||||||||| || |||||||| || || || || |
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| T |
8384435 |
cagagatggtggtcgga-cccttattatgtttaggtcttgactgatctttttatcttgtatatactttgtaagatggtttgtctttaagggtgatctctt |
8384337 |
T |
|
| Q |
113 |
tggtacaacttatactatggagttttcatcgtcattgttaatatatcccattttaatttctt |
174 |
Q |
| |
|
||||||| ||||||||| |||| | ||||| |||||||||||||||||||||| ||||||| |
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|
| T |
8384336 |
tggtacatcttatactagggagctcgcatcgccattgttaatatatcccattttgatttctt |
8384275 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 174
Target Start/End: Original strand, 41593407 - 41593446
Alignment:
| Q |
135 |
ttttcatcgtcattgttaatatatcccattttaatttctt |
174 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||| |
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| T |
41593407 |
ttttcatcgtcgttgttaatatatcctattttaatttctt |
41593446 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 13 - 174
Target Start/End: Original strand, 64262 - 64422
Alignment:
| Q |
13 |
cagagatggtggttggatcccttattgtgtttgggtcttgactgaccttattatcttgtaaatactttgtaagacggattgtcttttgggatggcctatt |
112 |
Q |
| |
|
|||||||| |||| |||||| ||| | |||||||||||||||||| || | ||||||||||||||||||||||||| |||||||||| | ||| || || |
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|
| T |
64262 |
cagagatgatggtcggatcctttactttgtttgggtcttgactgatgttgt-atcttgtaaatactttgtaagacggtttgtcttttgaggtggtctctt |
64360 |
T |
|
| Q |
113 |
tggtacaacttatactatggagttttcatcgtcattgttaatatatcccattttaatttctt |
174 |
Q |
| |
|
||||||| ||| ||||| ||| || |||||| |||| |||||||| ||||||| ||||||| |
|
|
| T |
64361 |
tggtacatcttgtactagggaattctcatcgccattattaatataatccattttgatttctt |
64422 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 50967 - 51050
Alignment:
| Q |
13 |
cagagatggtggttggatcccttattgtgtttgggtcttgactgaccttattatcttgtaaatactttgtaagacggattgtctt |
97 |
Q |
| |
|
||||||||||||| |||||| ||| || ||||||||||||||| || | ||||||||||||||||||||||||| ||||||| |
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| T |
50967 |
cagagatggtggtcggatcctttacattgcttgggtcttgactgatgttgt-atcttgtaaatactttgtaagacggtttgtctt |
51050 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 166
Target Start/End: Complemental strand, 9492306 - 9492154
Alignment:
| Q |
13 |
cagagatggtggttggatcccttattgtgtttgggtcttgactgaccttattatcttgtaaatactttgtaagacggattgtcttttgggatggcctatt |
112 |
Q |
| |
|
||||||||||||| ||| || ||| | |||||| ||||||||| | || ||||||||| |||||||||||||||| |||||||||||| ||| || || |
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|
| T |
9492306 |
cagagatggtggtcggaccctttagtttgtttgagtcttgactaatgtt-gtatcttgtatatactttgtaagacggtttgtcttttggggtggtctctt |
9492208 |
T |
|
| Q |
113 |
tggtacaacttatactatggagttttcatcgtcattgttaatatatcccatttt |
166 |
Q |
| |
|
||||||| ||| ||||| |||||| || ||| |||| ||||||||||||||||| |
|
|
| T |
9492207 |
tggtacatcttgtactagggagttctcttcgccattcttaatatatcccatttt |
9492154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 128
Target Start/End: Complemental strand, 15792790 - 15792679
Alignment:
| Q |
13 |
cagagatggtggttggatcccttattgtgtttgggtcttgactgaccttattatcttgtaaatactttgtaagacggattgtcttttgggatggcctatt |
112 |
Q |
| |
|
||||||||||||||||| |||||| | |||||||||||||||| | ||| || ||||| |||| |||||||||| |||||||||||| ||| || || |
|
|
| T |
15792790 |
cagagatggtggttggaccccttagtttgtttgggtcttgactaatcttttt---ttgtatatacactgtaagacgg-ttgtcttttggggtggtctctt |
15792695 |
T |
|
| Q |
113 |
tggtacaacttatact |
128 |
Q |
| |
|
||||||| ||| |||| |
|
|
| T |
15792694 |
tggtacatcttgtact |
15792679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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