View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8395_low_14 (Length: 241)
Name: NF8395_low_14
Description: NF8395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8395_low_14 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 48945473 - 48945688
Alignment:
| Q |
17 |
aatagtttatcatatttatacatttttgaatttattttagccctcacagtcacacataattatgtcaagctctcatctcttgtgccatcaaggtacgttt |
116 |
Q |
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| T |
48945473 |
aatagtttatcatatttatacatttttgaatttattttagccctcaca------cataattatgtcaagctcccatctcttgtgccatcaaggtacgttt |
48945566 |
T |
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| Q |
117 |
atagaatacaaaggtnnnnnnnnnnnnncttctaaattctgaaaaaatggaatgaagaattttcttttagagggaaagaaataattgctccagtaattat |
216 |
Q |
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| T |
48945567 |
atagaatacaaaggtaaaaaaaaaa---cttctaaattctgaaaaaatggaatgaagaattttcttgtagagggaaagaaataattgctccagtaattat |
48945663 |
T |
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| Q |
217 |
aacgtaaatagtaaaagaaattgat |
241 |
Q |
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| T |
48945664 |
aatataaatagtaaaagaaattgat |
48945688 |
T |
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