View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8395_low_4 (Length: 472)
Name: NF8395_low_4
Description: NF8395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8395_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 54737217 - 54737608
Alignment:
| Q |
1 |
aaaccaagaaggttaagaataatgatagcgaggctgtggatggtttgagtttggaagcgtcaaagttgagtggtactaagcatggtttgaatttggagaa |
100 |
Q |
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| T |
54737217 |
aaaccaagaaggttaagaataatgatagtgaggctgtcgatggtttgagtttggaagcgtcaaagttgactggtactaagcatggtttgaatgtggagaa |
54737316 |
T |
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| Q |
101 |
ggcttcggctaaggtggataagaatgggaaggttgctaatggtaacaaacgtgttaatggtggtgctgctgctgctaagcgtttcaaggctactgatatt |
200 |
Q |
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| T |
54737317 |
ggcttcggctaaggtggataagaatgggaaggttgctaatggtaacaaaggtgttaatggtggtgctgctgctgctaagcgtttcaaggcgactgatatt |
54737416 |
T |
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| Q |
201 |
gccccagcaaatgcaaccgaggtctatgcttccatctttacttcttctagaaagtctgaatttaaagaaacatattcttgcaggtctctgcctcttggta |
300 |
Q |
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| T |
54737417 |
gccccggcaaatgcaaccgaggtctatgcttccatctttacttcttctagaaagtctgaatttaaagaaacatattcttgcaggtctctgcctcttggta |
54737516 |
T |
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| Q |
301 |
gaaattaacttgtattttgtgttcaagtttgtactttatattcatgttaaatgtactcaattacaatttgttgtgttcactgttcagttatc |
392 |
Q |
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| T |
54737517 |
gaaattaacttgtattttgtattcaagtttgtactttatattcatgttaaatgtactcaattacaatttgttgtgttcactgttcagttatc |
54737608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 167 - 310
Target Start/End: Original strand, 54738879 - 54739019
Alignment:
| Q |
167 |
tgctgctgctaagcgtttcaaggctactgatattgccccagcaaatgcaaccgaggtctatgcttccatctttacttcttctagaaagtctgaatttaaa |
266 |
Q |
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| T |
54738879 |
tgctgctgctaagcgttttaaggcgactgatattgccccggcaaatgctaccgaggtctatgcattgattttta---cttctaggaagtctgagtttaaa |
54738975 |
T |
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| Q |
267 |
gaaacatattcttgcaggtctctgcctcttggtagaaattaact |
310 |
Q |
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| T |
54738976 |
gaaacatgttcgtgcagatctttgcctcttggtagaaattaact |
54739019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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