View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8395_low_9 (Length: 326)
Name: NF8395_low_9
Description: NF8395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8395_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 124; Significance: 9e-64; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 44 - 203
Target Start/End: Complemental strand, 8039146 - 8038986
Alignment:
| Q |
44 |
taattcattgaatttaatcaaatgtgtcagtggcgtattgatattagacatcgacacatgttggatactacacccgcattcaatcaataatgtcagtgct |
143 |
Q |
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| T |
8039146 |
taattcattgaatttaatcaaatgtgtcagtggcgtattgatattagacatcgacacatgttggatactacacccgcattcaatcaataatgtcagtgct |
8039047 |
T |
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| Q |
144 |
aaagaatttccaatagatgatacata-nnnnnnncccgaaagtcagcatatttattaacaa |
203 |
Q |
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| T |
8039046 |
aaagaatttgcaatagatgatacatattttttttcccgaaagtcagcatatttataaacaa |
8038986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 205 - 311
Target Start/End: Complemental strand, 8038923 - 8038817
Alignment:
| Q |
205 |
tagtttacgaagttcctttccatttcaaactcctctatgactctaagaagatatcagtcttataactcttaagccaaatacaaattaacaggctacacta |
304 |
Q |
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| T |
8038923 |
tagtttacaaagttcctttccatttcaaactcctctatgactctaagaagatatcagtcttataactcttaagccaaatacaaattaacaggctacacta |
8038824 |
T |
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| Q |
305 |
tcctttg |
311 |
Q |
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| T |
8038823 |
tcctttg |
8038817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 53 - 144
Target Start/End: Original strand, 8414083 - 8414174
Alignment:
| Q |
53 |
gaatttaatcaaatgtgtcagtggcgtattgatattagacatcgacacatgttggatactacacccgcattcaatcaataatgtcagtgcta |
144 |
Q |
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| T |
8414083 |
gaatttaatcacatgtgtcagtggcatgttgttattagacatcgacacatgttggatactaaattggcattcaatcagaaatgtcagtgcta |
8414174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 8033840 - 8033780
Alignment:
| Q |
44 |
taattcattgaatttaatcaaatgtgtcagtggcgtattgatattagacatcgacacatgt |
104 |
Q |
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| T |
8033840 |
taattcattgaatttaatcaaatgtgtcagtggtgtgttggtattaggcattgagacatgt |
8033780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 8414270 - 8414318
Alignment:
| Q |
96 |
gacacatgttggatactacacccgcattcaatcaataatgtcagtgcta |
144 |
Q |
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| T |
8414270 |
gacacatgttggatactaaactggcattcaatcagaaatgtcagtgcta |
8414318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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