View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8396_high_3 (Length: 267)
Name: NF8396_high_3
Description: NF8396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8396_high_3 |
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| [»] scaffold0024 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 66 - 267
Target Start/End: Complemental strand, 15873 - 15672
Alignment:
| Q |
66 |
gtggagtatctctcaccgagactcaaaatcatggcttcaaaatggaactcatccatcccacttcatcaagatcaccattttacaatagcaaagaagctca |
165 |
Q |
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| T |
15873 |
gtggagtatctctcaccgagactcaaaatcatggcttcaaaatggaactcatccatcccacctcatcaagatcaccattttacaatagcaaagaagctca |
15774 |
T |
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| Q |
166 |
aatacaacgagtttcaagtgtcataaatcattccattaatcgtgcccattacctcaatcatgtcctttctttttcacgtaatgacatgccaaaacccact |
265 |
Q |
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| T |
15773 |
aatacaacgagtttcaagtgtcataaatcattccattaatcgtgcccattacctcaatcatgtcctttctttttcacgtaatgacatgccaaaacccact |
15674 |
T |
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| Q |
266 |
at |
267 |
Q |
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|| |
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| T |
15673 |
at |
15672 |
T |
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Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 87 - 267
Target Start/End: Original strand, 8893853 - 8894033
Alignment:
| Q |
87 |
ctcaaaatcatggcttcaaaatggaactcatccatcccacttcatcaagatcaccattttacaatagcaaagaagctcaaatacaacgagtttcaagtgt |
186 |
Q |
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| T |
8893853 |
ctcaaaatcgtggtttcagtgtggaactaatccatcctgattcatcaagatcaccattctacaacatcagagaaactcaattacaacgaatttctaatgt |
8893952 |
T |
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| Q |
187 |
cataaatcattccattaatcgtgcccattacctcaatcatgtcctttctttttcacgtaatgacatgccaaaacccactat |
267 |
Q |
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| T |
8893953 |
tgtgactcattccatcaagcgtgctcattatctcaatcatgtgttttctctttcacataatgacttgccaaaacccactat |
8894033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 184
Target Start/End: Original strand, 19573073 - 19573185
Alignment:
| Q |
72 |
tatctctcaccgagactcaaaatcatggcttcaaaatggaactcatccatcccacttcatcaagatcaccattttacaatagcaaagaagctcaaataca |
171 |
Q |
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|||||||||| |||||||||| |||||||| || | |||||||||||||| | || ||||||||||||||||||||| |||||| ||||||| || |
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| T |
19573073 |
tatctctcactaagactcaaaaccatggctttaatgtagaactcatccatccaatctcctcaagatcaccattttacaatcctaaagaaactcaaatcca |
19573172 |
T |
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| Q |
172 |
acgagtttcaagt |
184 |
Q |
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|||| |||||||| |
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| T |
19573173 |
acgaatttcaagt |
19573185 |
T |
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