View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8396_low_1 (Length: 557)
Name: NF8396_low_1
Description: NF8396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8396_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 523; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 11 - 541
Target Start/End: Original strand, 39808783 - 39809313
Alignment:
| Q |
11 |
tgagaagaataaggaataatgttaattatattcggtgcctaactaactaacacaaaagacaatacaatacacaacacacaaatttgaaccaaaaatgagc |
110 |
Q |
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| T |
39808783 |
tgagaagaataaggaataatgttaattatattcggtgcctaactaactaacacaaaagacaacacaatacacaacacacaaatttgaaccaaaaatgagc |
39808882 |
T |
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| Q |
111 |
aatatacatcgttcattgcatgtggttctctaacactgcacacaaaacattacataaagataagccatgttgatcatgtaacattcaagaaacatacttc |
210 |
Q |
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| T |
39808883 |
aatatacatcgttcattgcatgtggttctctaacactgcacacaaaacattacataaagataagccatgttgatcatgtaacattcaagaaacatacttc |
39808982 |
T |
|
| Q |
211 |
atattagaatgagtacttgagtttaagaatattgtaaactgtatagtagttttacattacatatataatacaaagaaaggttgagattaatggctggtaa |
310 |
Q |
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| T |
39808983 |
atattagaatgagtacttgagtttaagaatattgtaaactgtatagtagttttacattacatatataatacaaagaaaggttgagattaatggctggtaa |
39809082 |
T |
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| Q |
311 |
tgagtggattaatggctaccttgaggctatactatccaccggtggtggcgcttctaccaccgttgaagagcagcaaagggtggcggctgcagcgagagaa |
410 |
Q |
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| T |
39809083 |
tgagtggattaatggctaccttgaggctatactatccaccggtggtggtgcttctaccaccgttgaagagcagcaaagggtggcggctgcagcgagagaa |
39809182 |
T |
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| Q |
411 |
agtggtgatcatttcaatccaacaaagtactttgttgaagaagtagtgagtgctgttgatgagtctgatcttcatcgtacatggcttaaggttgttgcca |
510 |
Q |
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| T |
39809183 |
agtggtgatcatttcaatccaacaaagtactttgttgaagaagtagtgagtgctgttgatgagtctgatcttcatcgtacatggcttaaggttgttgcca |
39809282 |
T |
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| Q |
511 |
ctcgtaatacaagggaacgtagctcaagact |
541 |
Q |
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| T |
39809283 |
ctcgtaatacaagggaacgtagctcaagact |
39809313 |
T |
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