View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8396_low_2 (Length: 466)
Name: NF8396_low_2
Description: NF8396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8396_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 16 - 397
Target Start/End: Original strand, 9321959 - 9322330
Alignment:
| Q |
16 |
gaaggaaggttcgttctagggttgtgtggtgcttctgcgttttggttgatttaggttttagtatttgttgattgattgtcaccatccactaatcattctg |
115 |
Q |
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| T |
9321959 |
gaaggaaggttcgttctagggttgtgtggttcttctgcgttt----------aggttttagtatttgttgattgattgtcaccatccactaatcattctg |
9322048 |
T |
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| Q |
116 |
ctaccgctaccaagaaatagagtgagcgttgtttccttcatcaaatgtgtaagttgtgtgtgttaaacatcatgcttaaggaagttgatgtgaagtcttt |
215 |
Q |
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| T |
9322049 |
ctactgctaccaagaaatagagtgagcgttgtttccttcatcaaatgtgtaagttgtgtgtgttaaacatcatgcttaaggaagttgatgtcaagtcttt |
9322148 |
T |
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| Q |
216 |
actattatgcgttggttatttttattttagtaactgctcttcactttttattactccattacttaaggtagttattggaattattttttcttttattgaa |
315 |
Q |
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| T |
9322149 |
actattatgcgttggttatttttattttagtaactgctcttcactttttattactccattacttatggtagttattggaattattttttcttttattgaa |
9322248 |
T |
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| Q |
316 |
aattctagctgtaattattggtagcacacaacttcataaaaaatcacatgaattttgtcacgaataagtttaaatgtatatt |
397 |
Q |
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| T |
9322249 |
aattctagctgtaattattggtagcacacaacttcataaaaaatcacatgaattttgtcacgaataagtttaaatgtatatt |
9322330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 380 - 431
Target Start/End: Original strand, 9322338 - 9322389
Alignment:
| Q |
380 |
taagtttaaatgtatatttagaatcaagatgagtttcacataaaaaccataa |
431 |
Q |
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| T |
9322338 |
taagtttaaatgtatatttagaatcaagatgagtttcacataaataccataa |
9322389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 9329571 - 9329642
Alignment:
| Q |
16 |
gaaggaaggttcgttctagggttgtgtggtgcttctgcgttttggttgattta-ggttttagtatttgttga |
86 |
Q |
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| T |
9329571 |
gaaggaaggttcgttctagggttgtgtggaactgctacgttttggttgatttagggttttagtttttgttga |
9329642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 174 - 258
Target Start/End: Original strand, 11634231 - 11634316
Alignment:
| Q |
174 |
tgtgttaaacatcatgcttaaggaagttgatgtgaagtctttac-tattatgcgttggttatttttattttagtaactgctcttca |
258 |
Q |
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| T |
11634231 |
tgtgttaaatatcatgcttaggactgctgatgtggagtcattatgtattatgtgttggttatttttattttagtaactgctgttca |
11634316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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