View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8396_low_5 (Length: 250)
Name: NF8396_low_5
Description: NF8396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8396_low_5 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 15 - 241
Target Start/End: Original strand, 15373 - 15599
Alignment:
| Q |
15 |
cttgtgacattgactcagacaaatatgaaactttatattcacattttcttttatgattggaagagcaatgactattttcgaaacgtttacatgtgggaga |
114 |
Q |
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| T |
15373 |
cttgtgacattgacttagataaatatgaaactttatattcacattttcttttatgattggaagagcaatggctattttcgaaacgtttacatgtgggaga |
15472 |
T |
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| Q |
115 |
agagcaatgaatgtttttataggttgaagattttgaagggttaaacattggagatgtttggtttaaacatggtttacacgacttacattgaaaccaaatt |
214 |
Q |
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| T |
15473 |
agagcaatgaatgtttttataggttgaagattttgaagggttaaacattggagatgtttggtttaaacatggtttacacggcttacattgaaaccaaatt |
15572 |
T |
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| Q |
215 |
ccatcactacctgtatccataacacca |
241 |
Q |
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| T |
15573 |
ccatcactacctgtatccatagcacca |
15599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 34 - 241
Target Start/End: Complemental strand, 8894307 - 8894100
Alignment:
| Q |
34 |
caaatatgaaactttatattcacattttcttttatgattggaagagcaatgactattttcgaaacgtttacatgtgggagaagagcaatgaatgttttta |
133 |
Q |
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| T |
8894307 |
caaatatgtaatttcatattcacatttccttttacgattagatgaacaacgtgttttttctccacgtttacatatcggagaagagcaacggatgtttttg |
8894208 |
T |
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| Q |
134 |
taggttgaagattttgaagggttaaacattggagatgtttggtttaaacatggtttacacgacttacattgaaaccaaattccatcactacctgtatcca |
233 |
Q |
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| T |
8894207 |
taggttgatgattttgaagggttaaatatcggagatgtttggtttaaacatggtttacaaggcttacattgaaaccatattccgtcactgcctgtatcca |
8894108 |
T |
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| Q |
234 |
taacacca |
241 |
Q |
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| T |
8894107 |
caacacca |
8894100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 63 - 213
Target Start/End: Original strand, 16803736 - 16803886
Alignment:
| Q |
63 |
ttttatgattggaagagcaatgactattttcgaaacgtttacatgtgggagaagagcaatgaatgtttttataggttgaagattttgaagggttaaacat |
162 |
Q |
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| T |
16803736 |
ttttatcatcggaagagcaatgcgtattttctacatttttgcatttgggagaagagcaaggaatggttttataggttgaagattttgaagggtcaaacat |
16803835 |
T |
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| Q |
163 |
tggagatgtttggtttaaacatggtttacacgacttacattgaaaccaaat |
213 |
Q |
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| T |
16803836 |
tggtgatgttgtgttgaaacatggtttacacggattacattgaaaccaaat |
16803886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 108 - 213
Target Start/End: Complemental strand, 19573468 - 19573363
Alignment:
| Q |
108 |
tgggagaagagcaatgaatgtttttataggttgaagattttgaagggttaaacattggagatgtttggtttaaacatggtttacacgacttacattgaaa |
207 |
Q |
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| T |
19573468 |
tgggagaagtgcatggaatggttttgtaggttgatgattttgaagggtgaaacattggtgatgtttggtttaaacatggtttgcacggcttacattgaaa |
19573369 |
T |
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| Q |
208 |
ccaaat |
213 |
Q |
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| T |
19573368 |
ccaaat |
19573363 |
T |
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