View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8396_low_6 (Length: 239)
Name: NF8396_low_6
Description: NF8396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8396_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 14390126 - 14389926
Alignment:
| Q |
1 |
tcccaaacaagaagtcctccatatctaaaatgaatgacacctaacaagaagtaacatgcgacagnnnnnnnnntataagaacagaattttagaaacacaa |
100 |
Q |
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| T |
14390126 |
tcccaaacaagaagtcttccatatctaaaatgaatgacacctaacaagaagtaacatgcgacagaaaaaaaaatataagaacagaattttagaaacacaa |
14390027 |
T |
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| Q |
101 |
ccggtgcataataagaaatcatactctaatcagtgcaggaatcagcaatatgtgcaaaatcacaacattaggcttgtttatgaaaagaatttcatacata |
200 |
Q |
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| T |
14390026 |
ccagtgcataataagaaatcatactctaatcagtgcaggaatcagcaatatgtgcaaaatcacaacattaggcttgtttatgaaaagaatttcatacata |
14389927 |
T |
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| Q |
201 |
g |
201 |
Q |
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| |
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| T |
14389926 |
g |
14389926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 184
Target Start/End: Original strand, 14358585 - 14358628
Alignment:
| Q |
141 |
atcagcaatatgtgcaaaatcacaacattaggcttgtttatgaa |
184 |
Q |
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| T |
14358585 |
atcagcaatatttgcaaaagcacaacattaggcttgtttatgaa |
14358628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 107 - 184
Target Start/End: Complemental strand, 14397918 - 14397840
Alignment:
| Q |
107 |
cataataagaaatcatactctaatc-agtgcaggaatcagcaatatgtgcaaaatcacaacattaggcttgtttatgaa |
184 |
Q |
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| T |
14397918 |
cataataggacatcatactcaaacccagtgcagctatcaacaatatgtacaaaatcacaacattaagcttgtttatgaa |
14397840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 13857615 - 13857663
Alignment:
| Q |
136 |
caggaatcagcaatatgtgcaaaatcacaacattaggcttgtttatgaa |
184 |
Q |
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| T |
13857615 |
caggtatcaacaatgtgtgcaaaatcacgacattaggcttgtttatgaa |
13857663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 184
Target Start/End: Original strand, 13866107 - 13866182
Alignment:
| Q |
110 |
aataagaaatcatactctaat-cagtgcaggaatcagcaatatgtgcaaaatcacaacattaggcttgtttatgaa |
184 |
Q |
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||||||||||||| ||||||| || | |||| ||||||||| || |||||||||| ||||| ||| |||||||||| |
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| T |
13866107 |
aataagaaatcattctctaatccaattcaggtatcagcaatgtgcgcaaaatcacgacattgggcctgtttatgaa |
13866182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 14391626 - 14391588
Alignment:
| Q |
146 |
caatatgtgcaaaatcacaacattaggcttgtttatgaa |
184 |
Q |
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| T |
14391626 |
caatatgtacaaaatcactacattaggcttgtttatgaa |
14391588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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