View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8397_high_2 (Length: 458)
Name: NF8397_high_2
Description: NF8397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8397_high_2 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 16 - 458
Target Start/End: Complemental strand, 32816826 - 32816386
Alignment:
| Q |
16 |
cacacgacgagatacctgagcttgtgaactcggctttattggattggctagccacccttactcctaaagtctctctccaaacagtttgaacaatattgta |
115 |
Q |
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| T |
32816826 |
cacacgacgagatacctgagcttgtgaactcggctttattggattggctcgccacccttactcctaaagtctctctccaaacagtttgaaca---ttgta |
32816730 |
T |
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| Q |
116 |
taaccttgtatgtatagctaatcaaacattattcttgattaagttttga-attcatcctgttggacgaagtcatcaccatacgatgtataggaaagccgg |
214 |
Q |
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| T |
32816729 |
taaccttgtatgtatagctaatcaaacattattcttgattaagttttgagattcatcctgttggacgaagtcatcaccatacgatgtataggaaagccgg |
32816630 |
T |
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| Q |
215 |
ttaaaaatactcaggatagttgaaaatgagaacacacatagactatggtcatgtttctgcttccttgcactttttgaagaccatgtatgcattcaattct |
314 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32816629 |
ttaaaaatactcaggatagttgaaaatgacaacacacatagactatggtcatgtttctgcttccttgcactttttgaagaccatgtatgcattcaattct |
32816530 |
T |
|
| Q |
315 |
tacactatatagaactttctctttcgttaatcgagttatatatttgaattttctccttcaaacattagaaaatagaagtgtacactatttcgttatttaa |
414 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
32816529 |
tacactatatagaactttctctttcattaatcgagttatatatttgaattttatccttcaaacattagcaaatagaagtgtacactatttagttatttaa |
32816430 |
T |
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| Q |
415 |
gtcaatggctaagatcaaataagttaatcacaacggactctaat |
458 |
Q |
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|||||| | |||| |||||||||| ||||| ||||||||||||| |
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| T |
32816429 |
gtcaatagataagttcaaataagtcaatcaaaacggactctaat |
32816386 |
T |
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