View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8397_high_5 (Length: 250)
Name: NF8397_high_5
Description: NF8397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8397_high_5 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 47291121 - 47291362
Alignment:
| Q |
9 |
gagaagaacatgatttttcgttccattgtctgctcgattgctttaatccataaagagatcattttagtttgcaaagactcgggtggtttcataaaaacat |
108 |
Q |
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| T |
47291121 |
gagaagaacatgatttttggttccattgtctgctcgattgatttaatccataaagagatcattttagtttgcaaagactcgggtggtttcataaaaacat |
47291220 |
T |
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| Q |
109 |
tgtcatcaagatatccatggagaaaagctatgtaaatatctaattgatataaataccaatttttaggatcaacaatggtcaaaagaaatagtgtagaagt |
208 |
Q |
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| T |
47291221 |
tgtcatcaagatatccatggagaaaagctatgtaaatatctaattgatataaataccaatttttaggatcaacaatggtcaaaagaaatagtgtagaagt |
47291320 |
T |
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| Q |
209 |
cctcttaacaacagggctaaaagtttctacataatataatcc |
250 |
Q |
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| T |
47291321 |
cctcttaacaacagggctaaaagtttctagataatataatcc |
47291362 |
T |
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