View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8397_low_7 (Length: 236)
Name: NF8397_low_7
Description: NF8397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8397_low_7 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 39 - 236
Target Start/End: Complemental strand, 47291664 - 47291467
Alignment:
| Q |
39 |
tcaattgatcaagtttttctcctaacaagaaacatatagtagcgtacttttttggttaattttcgtaaatctacatggtatcaaatgataataaactctg |
138 |
Q |
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| T |
47291664 |
tcaattgatcaagtttttctgctaacaagaaacatatagtagcgtacttttttggttaattttcgtaaatctacatggtatcaaatgataataaactctg |
47291565 |
T |
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| Q |
139 |
atttttcatggtcctcgatcctgatcctgaaattgctcaaagtgtcctctatatatatggaatatgacgttgaaattgctcaaagtttctgattctac |
236 |
Q |
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| T |
47291564 |
atttttcatggtcctcggtcctgatcctgaaattgctcaaagtgtcctctatatatatggaatatgacgttgaaattgctcaaagtttctgattctac |
47291467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 236
Target Start/End: Complemental strand, 47298191 - 47298116
Alignment:
| Q |
161 |
gatcctgaaattgctcaaagtgtcctctatatatatggaatatgacgttg--aaattgctcaaagtttctgattctac |
236 |
Q |
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| T |
47298191 |
gatcctgaaattgctca--gtgtcctctatatatatagaatatgaagctgaaaaatcgctcaaagtttctgattctac |
47298116 |
T |
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