View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8398_high_1 (Length: 520)
Name: NF8398_high_1
Description: NF8398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8398_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 489; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 20 - 516
Target Start/End: Complemental strand, 52771657 - 52771161
Alignment:
| Q |
20 |
ggatgttgggtgtttcagctgtccctgcacttgttcaattcattctcatgcttttcctccctgaatcaccaagatggctttttatgaagaatagaaagaa |
119 |
Q |
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| T |
52771657 |
ggatgttgggtgtttcagctgtccctgcacttgttcaattcattctcatgcttttcctccctgaatcaccaagatggctttttatgaagaatagaaagaa |
52771558 |
T |
|
| Q |
120 |
tgaagctgttgatgtcatttccaacatctatgacttggctcgtcttgaagacgaagttgattttctaacagctgaggcagaacaagacagacagaaaaat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52771557 |
tgaagctgttgatgtcatttccaacatctatgacttggctcgtcttgaagacgaagttgattttctaacagctgaggcagaacaagacagacagaaaaat |
52771458 |
T |
|
| Q |
220 |
atgaatgtcaaatttaaagatgtttttaaatctaaagaaatcagactagcattcatggttggagcaggattgatggtgttccaacagtttactggcatta |
319 |
Q |
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| T |
52771457 |
atgaatgtcaaatttaaagatgtttttaaatctaaagaaatcagactagcattcatggttggagcaggattgatggtgttccaacagtttactggcatta |
52771358 |
T |
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| Q |
320 |
acacagtgatgtactacagtccaaccattgttcaaatggctggatttcaatctaaagagttggctcttcaaatctcactctttgttgctgcaatgaatgc |
419 |
Q |
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| T |
52771357 |
acacagtgatgtactacagtccaaccattgttcaaatggctggatttcaatctaaagagttggctcttcaaatctcactctttgttgctgcaatgaatgc |
52771258 |
T |
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| Q |
420 |
tgtcggaactgttcttggtatttacctcattgatcatgcagggaggaagatattagctctttgtagcttaggaggagtgtttacatctctgcttctc |
516 |
Q |
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| T |
52771257 |
tgtcggaactgttcttggtatttacctcattgatcatgcagggaggaagatattagctctttgtagcttaggaggagtgtttacatctttggttctc |
52771161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 319 - 497
Target Start/End: Complemental strand, 52767403 - 52767225
Alignment:
| Q |
319 |
aacacagtgatgtactacagtccaaccattgttcaaatggctggatttcaatctaaagagttggctcttcaaatctcactctttgttgctgcaatgaatg |
418 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||| ||||||||||||||| |||| ||| | ||||||| |||||| |
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| T |
52767403 |
aacacagtgatgtactacagtccaacaattgtccaaatggctggctttcactctaatgagttggctcttcaactctctctcatagttgctggcttgaatg |
52767304 |
T |
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| Q |
419 |
ctgtcggaactgttcttggtatttacctcattgatcatgcagggaggaagatattagctctttgtagcttaggaggagt |
497 |
Q |
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| T |
52767303 |
ctgccggaacagttcttggtatttaccttattgaccatgcaggacggaaaaaattagccctgtatagcttaggaggagt |
52767225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 304 - 452
Target Start/End: Original strand, 392439 - 392587
Alignment:
| Q |
304 |
cagtttactggcattaacacagtgatgtactacagtccaaccattgttcaaatggctggatttcaatctaaagagttggctcttcaaatctcactctttg |
403 |
Q |
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|||||||| || || ||||| |||||||||||||||||||||||||||||||||||||| || || | || |||||||||||| | || ||| | | |
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| T |
392439 |
cagtttacaggtataaacacggtgatgtactacagtccaaccattgttcaaatggctggcttccatgccaatcagttggctcttcttctgtccctcatag |
392538 |
T |
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| Q |
404 |
ttgctgcaatgaatgctgtcggaactgttcttggtatttacctcattga |
452 |
Q |
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|||||| ||||| ||||||||||| ||||||| |||||||| ||||| |
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| T |
392539 |
ttgctggcatgaacgctgtcggaacaattcttggcatttaccttattga |
392587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 390738 - 390814
Alignment:
| Q |
28 |
ggtgtttcagctgtccctgcacttgttcaattcattctcatgcttttcctccctgaatcaccaagatggctttttat |
104 |
Q |
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|||||||||| ||| ||||||||| | || |||||| |||||| |||||||| ||||| ||||||||||| ||||| |
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| T |
390738 |
ggtgtttcaggtgtgcctgcacttatccagttcatttgcatgctcttcctccccgaatctccaagatggctatttat |
390814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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