View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8398_low_2 (Length: 297)
Name: NF8398_low_2
Description: NF8398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8398_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 5e-93; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 35803088 - 35802892
Alignment:
| Q |
18 |
agacttggggtgaaatcactccctcctatgatttcttttagaaaatactctaaaatcagaaaatggactgtgggaatatcagaggctaaagaacaaatag |
117 |
Q |
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| T |
35803088 |
agacttggggtgaaatcactccctcctatgatttcttttagaaaatactctaaagtcagaaaatggactgtgggaatatcagaggctaaagaacaaatag |
35802989 |
T |
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| Q |
118 |
ccatcatccgagtctcagggaatatggatagtgatatcgtcacaagtaatttcattcagaagattggtatggtcaaagattcaaaaatattcaaggc |
214 |
Q |
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| T |
35802988 |
ccatcatccgagcctcagggactatggatagtgacatcgtcacaagtaatttcattgagaagattggtatggtcaaagattcaaaaaaattcaaggc |
35802892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 21 - 191
Target Start/End: Original strand, 35854229 - 35854396
Alignment:
| Q |
21 |
cttggggtgaaatcactccctcctatgatttcttttagaaaatactctaaaatcagaaaatggactgtgggaatatcagaggctaaagaacaaatagcca |
120 |
Q |
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| T |
35854229 |
cttggggttaaatcactccct---atgatttcttttagaaaatactctaaaggcagaaaatggactgtggcaatatcagaggctaaagaacaaattgcca |
35854325 |
T |
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| Q |
121 |
tcatccgagtctcagggaatatggatagtgatatcgtcacaagtaatttcattcagaagattggtatggtc |
191 |
Q |
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| T |
35854326 |
tcatccgagtctcagggaatatggttagtgacatcgtcacaagtaatttcattgagaagattggaatggtc |
35854396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 24 - 216
Target Start/End: Original strand, 10520736 - 10520925
Alignment:
| Q |
24 |
ggggtgaaatcactccctcctatgatttcttttagaaaatactctaaaatcagaaaatggactgtgggaatatcagaggctaaagaacaaatagccatca |
123 |
Q |
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| T |
10520736 |
ggggtgaaatcactccct---atgatttcttttgaaaaatactctaaagttagaaaatggactgttggaatatcagaggcgaaagaacaaatagccatca |
10520832 |
T |
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| Q |
124 |
tccgagtctcagggaatatggatagtgatatcgtcacaagtaatttcattcagaagattggtatggtcaaagattcaaaaatattcaaggctg |
216 |
Q |
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| T |
10520833 |
tccgagtctcagggactatgggtacggatattgtcacaagtaagttcattgagaagattggtatggtcaaagcgtcaaaagaaatcaaggctg |
10520925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 290
Target Start/End: Complemental strand, 35802900 - 35802844
Alignment:
| Q |
234 |
attcaaggctgttattgtccggattgacagtgtaggaggaaattttcgttcatctca |
290 |
Q |
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| T |
35802900 |
attcaaggcggttattgtccggattgacagtgtaggaggtgattttcatgcatctca |
35802844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 60 - 137
Target Start/End: Complemental strand, 56209218 - 56209141
Alignment:
| Q |
60 |
aaatactctaaaatcagaaaatggactgtgggaatatcagaggctaaagaacaaatagccatcatccgagtctcaggg |
137 |
Q |
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| T |
56209218 |
aaatactctcgaattagaaaatggactgttggaatatcaaagggtaaagaactaatagccatcattcgagcctcaggg |
56209141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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