View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8398_low_5 (Length: 229)
Name: NF8398_low_5
Description: NF8398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8398_low_5 |
 | |
|
| [»] scaffold0586 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0586 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: scaffold0586
Description:
Target: scaffold0586; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 11 - 214
Target Start/End: Complemental strand, 9794 - 9589
Alignment:
| Q |
11 |
aagcagagaaatgacaaattcatttagtaacaaagcaataagcaacatcagaagacaaaatg-cagagaaatgatataaatcaccaaatctatgttgagt |
109 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9794 |
aagcagagaaatgacaaattcattaagtaacaaagcaataagcaacatcagaagacaaaaaaacagagaaatgatataaatcaccaaatctatgttgagt |
9695 |
T |
|
| Q |
110 |
aatggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaacccaaacagcaagcagttgatgaacactac-aagatcatggg |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
9694 |
aatggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaactcaaacaacaagcagttgatgaacactacaaagatcatggg |
9595 |
T |
|
| Q |
209 |
tgaaaa |
214 |
Q |
| |
|
|||||| |
|
|
| T |
9594 |
tgaaaa |
9589 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 11 - 199
Target Start/End: Original strand, 32717745 - 32717934
Alignment:
| Q |
11 |
aagcagagaaatgacaaattcatttagtaacaaagcaataagcaacatcagaagacaaaatg-cagagaaatgatataaatcaccaaatctatgttgagt |
109 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32717745 |
aagcagagaaatgacaaattcatttagcaacaaagcaataagcaacatcagaagacaaaaaaacagagaaatgatataaatcaccaaatctatgttgagt |
32717844 |
T |
|
| Q |
110 |
aatggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaacccaaacagcaagcagttgatgaacactacaa |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
32717845 |
aatggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaactcaaacagcaagcagttgatgaacactacaa |
32717934 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 11 - 199
Target Start/End: Complemental strand, 10637849 - 10637660
Alignment:
| Q |
11 |
aagcagagaaatgacaaattcatttagtaacaaagcaataagcaacatcagaagacaaaatg-cagagaaatgatataaatcaccaaatctatgttgagt |
109 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10637849 |
aagcagggaaatgacaaattcatttagtaacaaagcaataagcaacatcagaagacaaaaaaacagagaaatgatataaatcaccaaatctatgttgagt |
10637750 |
T |
|
| Q |
110 |
aatggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaacccaaacagcaagcagttgatgaacactacaa |
199 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10637749 |
aatggaagaattaaaatgaaattagatgataccttgaagagaagagtgaaatccaaaactcaaacagcaagcagttgatgaacactacaa |
10637660 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 14 - 209
Target Start/End: Complemental strand, 22894005 - 22893804
Alignment:
| Q |
14 |
cagagaaatgacaaattcatttagtaacaaagcaataagcaacatcagaagacaaaatg-----cagagaaatgatataaatcaccaaatctatgttgag |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
22894005 |
cagagaaatgacaaattcatttagtaacaaagcaataagcaacatcagaagacaaaaaaaaaaacagagaaatgatataaatcaccaaatctatgttgag |
22893906 |
T |
|
| Q |
109 |
taatggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaacccaaacagcaagcagttgatgaacactac-aagatcatgg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
22893905 |
taatggaagaattaaaatgaaattagatgttaccttgaagagaagagtgaaatccaaaactcaaacagcaagcagttgatgaacactacaaagatcatgg |
22893806 |
T |
|
| Q |
208 |
gt |
209 |
Q |
| |
|
|| |
|
|
| T |
22893805 |
gt |
22893804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 79 - 199
Target Start/End: Complemental strand, 44306261 - 44306142
Alignment:
| Q |
79 |
aatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaacccaaacagca |
178 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||| ||| ||| || ||||||||||||||||||||||||||||||| |||| ||| |||| |
|
|
| T |
44306261 |
aatgatatcaatgaccaaatctatgttgagtaatggaagaattgaaaagaattt-gatggtaccttgaagagaagagtgaaatccagaaccaaaatagca |
44306163 |
T |
|
| Q |
179 |
agcagttgatgaacactacaa |
199 |
Q |
| |
|
|||||||||||||||| |||| |
|
|
| T |
44306162 |
agcagttgatgaacaccacaa |
44306142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 11 - 214
Target Start/End: Complemental strand, 19701366 - 19701156
Alignment:
| Q |
11 |
aagcagagaaatgacaaattcatttagtaacaaagcaataagcaacatcagaagacaaaatg------cagagaaatgatataaatcaccaaatctatgt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
19701366 |
aagcagagaaatgacaaattcatttagtaacaaagcaataagcaacatcagaagacaaaaaaaaaaatcagagaaatgatataaatcaacaaatctatgt |
19701267 |
T |
|
| Q |
105 |
tgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaacccaaacagcaagcagttgatgaacactac-aagatc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||| |||||| |
|
|
| T |
19701266 |
tgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaaaagtgaaatccaaaactcaaatagcaagcagttgatgaacactacaaagatc |
19701167 |
T |
|
| Q |
204 |
atgggtgaaaa |
214 |
Q |
| |
|
||||||||||| |
|
|
| T |
19701166 |
atgggtgaaaa |
19701156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 40 - 209
Target Start/End: Complemental strand, 21481599 - 21481428
Alignment:
| Q |
40 |
acaaagcaataagcaacat-cagaagacaaaatg-cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatg |
137 |
Q |
| |
|
|||||||||||||||||| ||| |||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
21481599 |
acaaagcaataagcaacaaacagcagacaaaaaaacagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatg |
21481500 |
T |
|
| Q |
138 |
gtaccttgaagagaagagtgaaatccaaaacccaaacagcaagcagttgatgaacactacaagatcatgggt |
209 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||| ||||| |||||||| |||| |||||||||||| |
|
|
| T |
21481499 |
ttaccttgaatagaagagtgaaatcaaaaacccaattggcaagtagttgatgcacacacaaagatcatgggt |
21481428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 42 - 209
Target Start/End: Original strand, 13331485 - 13331653
Alignment:
| Q |
42 |
aaagcaataagcaacatcagaagacaaaatgcagagaaatgatata-aatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatggta |
140 |
Q |
| |
|
|||||||||||||||| ||| ||| |||| | |||||||| ||| |||||||||||||||||||||||||||||||||| | || ||||||||||||| |
|
|
| T |
13331485 |
aaagcaataagcaacaacagcagaaaaaaagaagagaaattttatccaatcaccaaatctatgttgagtaatggaagaattgagataaaattagatggta |
13331584 |
T |
|
| Q |
141 |
ccttgaagagaagagtgaaatccaaaacccaaacagcaagcagttgatgaacactacaagatcatgggt |
209 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
13331585 |
ccttgaagagaagagtgaaatcaaaaactcaatcagcaagcagttgatgaacacacaaagatcatgggt |
13331653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 42 - 209
Target Start/End: Original strand, 13342400 - 13342568
Alignment:
| Q |
42 |
aaagcaataagcaacatcagaagacaaaatgcagagaaatgatata-aatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatggta |
140 |
Q |
| |
|
|||||||||||||||| ||| ||| |||| | |||||||| ||| |||||||||||||||||||||||||||||||||| | || ||||||||||||| |
|
|
| T |
13342400 |
aaagcaataagcaacaacagcagaaaaaaagaagagaaattttatccaatcaccaaatctatgttgagtaatggaagaattgagataaaattagatggta |
13342499 |
T |
|
| Q |
141 |
ccttgaagagaagagtgaaatccaaaacccaaacagcaagcagttgatgaacactacaagatcatgggt |
209 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
13342500 |
ccttgaagagaagagtgaaatcaaaaactcaatcagcaagcagttgatgaacacacaaagatcatgggt |
13342568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 79 - 194
Target Start/End: Original strand, 33430221 - 33430337
Alignment:
| Q |
79 |
aatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaa-ttagatggtaccttgaagagaagagtgaaatccaaaacccaaacagc |
177 |
Q |
| |
|
|||||| | ||||| |||||||| |||||||||||||| ||||||| ||| |||||||||||||||||||||| |||||||| ||||| ||||| ||| |
|
|
| T |
33430221 |
aatgatgtcaatcatcaaatctacgttgagtaatggaacgattaaaaaaaaaattagatggtaccttgaagagaatagtgaaattcaaaatccaaatagc |
33430320 |
T |
|
| Q |
178 |
aagcagttgatgaacac |
194 |
Q |
| |
|
|| || ||||||||||| |
|
|
| T |
33430321 |
aaacacttgatgaacac |
33430337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 42 - 209
Target Start/End: Original strand, 5671957 - 5672124
Alignment:
| Q |
42 |
aaagcaataagcaacatcagaagacaaaatgcagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatggtac |
141 |
Q |
| |
|
|||||||||||||||| || ||| |||| | |||||||| || |||||||||||||||||||||||||||||||||| | || |||||||||||||| |
|
|
| T |
5671957 |
aaagcaataagcaacaacaacagaaaaaaagaagagaaattttaccaatcaccaaatctatgttgagtaatggaagaattgagataaaattagatggtac |
5672056 |
T |
|
| Q |
142 |
cttgaagagaagagtgaaatccaaaacccaaacagcaagcagttgatgaacactacaagatcatgggt |
209 |
Q |
| |
|
||||||||||||||||||||| ||||| ||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
5672057 |
cttgaagagaagagtgaaatcaaaaactcaatcagcaagcagttgatgaacacacaaagatcatgggt |
5672124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 79 - 199
Target Start/End: Complemental strand, 6050045 - 6049925
Alignment:
| Q |
79 |
aatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaacccaaacagca |
178 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||| |||| ||| |||| |
|
|
| T |
6050045 |
aatgatatcaatcaccaaatctatgttgagtaatggaagaattgaaaagaaatttgatggtaccttgaagagaagagtgaaatccagaaccaaaatagca |
6049946 |
T |
|
| Q |
179 |
agcagttgatgaacactacaa |
199 |
Q |
| |
|
|||||||||||||||| |||| |
|
|
| T |
6049945 |
agcagttgatgaacaccacaa |
6049925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 40 - 209
Target Start/End: Complemental strand, 26661681 - 26661510
Alignment:
| Q |
40 |
acaaagcaataagcaacat-cagaagacaaaatg-cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatg |
137 |
Q |
| |
|
|||||||||||||||||| ||| |||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
26661681 |
acaaagcaataagcaacaaacagcagacaaaaaaacagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatg |
26661582 |
T |
|
| Q |
138 |
gtaccttgaagagaagagtgaaatccaaaacccaaacagcaagcagttgatgaacactacaagatcatgggt |
209 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||| |||||||||||||| |||| |||||||||||| |
|
|
| T |
26661581 |
ataccttgaacagaagagtgaaatcaaaaacccaattggcaagcagttgatgcacacacaaagatcatgggt |
26661510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 79 - 194
Target Start/End: Original strand, 13893695 - 13893810
Alignment:
| Q |
79 |
aatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaacccaaacagca |
178 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||| |||| ||| | || |
|
|
| T |
13893695 |
aatgatatcaatcaccaaatctatgttgagtaatggaagaattgaaaagaaatttgatggtaccttgaagagaagagtgaaatccagaaccaaaataaca |
13893794 |
T |
|
| Q |
179 |
agcagttgatgaacac |
194 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
13893795 |
agcagttgatgaacac |
13893810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 88 - 193
Target Start/End: Original strand, 15761974 - 15762079
Alignment:
| Q |
88 |
aatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaacccaaa-cagcaagcagttg |
186 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| | ||||||||||||||||| ||||| |||| |||||||| ||||||||||| ||||| ||||| |
|
|
| T |
15761974 |
aatcaccaaatctatgttgagtaatagaagaattgagatgaaattagatggtactttgaaaagaatagtgaaat-caaaacccaaattagcaaatagttg |
15762072 |
T |
|
| Q |
187 |
atgaaca |
193 |
Q |
| |
|
||||||| |
|
|
| T |
15762073 |
atgaaca |
15762079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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