View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8399_high_1 (Length: 511)
Name: NF8399_high_1
Description: NF8399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8399_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 12 - 252
Target Start/End: Original strand, 36276314 - 36276554
Alignment:
| Q |
12 |
ctcgcagctagacactaactcttgactttgaagcaaaaacaatcgacccatcataatccagcaaacaaacctcaaaggcattcgacatgtgggacggtgg |
111 |
Q |
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| T |
36276314 |
ctcgcagctagacactaactcttgactttgaagcaaaaacaatcgacccatcataatccagcaaacaaacctcaaaggcattcgacatgtgggacggtgg |
36276413 |
T |
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| Q |
112 |
tgaaaacaaaaatcatgttagaaaaggaaaaagctcaactcgaagaccacacatagtcgaagcacccaaacataaaagtaacccaaaactcaaccaaagc |
211 |
Q |
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| T |
36276414 |
tgaaaacagaaatcatgtcagaaaagtaaaaagctcaactcgaagaccacacatagtcgaagcacccaaacataaaagtaacccaaaactcaaccaaaga |
36276513 |
T |
|
| Q |
212 |
gtttgcaacggtggatatggacccaaagcagaggcgcctat |
252 |
Q |
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| T |
36276514 |
gctagcaatggtggatatggacccaaagcagaggcgcctat |
36276554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 315 - 412
Target Start/End: Original strand, 36276617 - 36276714
Alignment:
| Q |
315 |
gttaatacacccataaccctatctaaacaacacctttacccctcttgatcagcttcagtccaccaagatatccgatgtcagatcccagtccagaattt |
412 |
Q |
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| T |
36276617 |
gttaatacacccataaccctatctaaacaacacctttacccctcttgatcagcttcagtccaccaagatatccgatgtcatatcccagttcataattt |
36276714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 315 - 382
Target Start/End: Complemental strand, 9657260 - 9657194
Alignment:
| Q |
315 |
gttaatacacccataaccctatctaaacaacacctttacccctcttgatcagcttcagtccaccaaga |
382 |
Q |
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| T |
9657260 |
gttaaaacatccataaccctatctaaacaacacttgtacccc-cttgatcaactccagtccaccaaga |
9657194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 9657532 - 9657364
Alignment:
| Q |
19 |
ctagacactaactcttgactttgaagcaaaaacaatcgacccatcataatccagcaaacaaacctcaaaggcattcgacatgtgggacggtggtgaaaac |
118 |
Q |
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| T |
9657532 |
ctagatactaactcatgatctcgaagcgaaatcaatcggcccaccataatccaggaaaaaatcctgaaaggatatcgacaggtgggacagtggtgaaaac |
9657433 |
T |
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| Q |
119 |
aaaaatcatgttagaaaaggaaaaagctcaactcgaagaccacacatagtcgaagcacccaaacataaaag |
189 |
Q |
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| T |
9657432 |
agaaaacatgtca-aaaaagaaaaggctcatttaaaaaaccacccatagtcgaagcagcc-aacataaaag |
9657364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 315 - 382
Target Start/End: Complemental strand, 13528285 - 13528219
Alignment:
| Q |
315 |
gttaatacacccataaccctatctaaacaacacctttacccctcttgatcagcttcagtccaccaaga |
382 |
Q |
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| T |
13528285 |
gttaaaacatccataaccctatctaaacaacacttgtacccc-cttgatcaactccagtccaccaaga |
13528219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 13528557 - 13528389
Alignment:
| Q |
19 |
ctagacactaactcttgactttgaagcaaaaacaatcgacccatcataatccagcaaacaaacctcaaaggcattcgacatgtgggacggtggtgaaaac |
118 |
Q |
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||||| |||||||| ||| | ||||| ||| |||||| |||| |||||||||| ||| || ||| ||||| |||||| ||||||| ||||||||||| |
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| T |
13528557 |
ctagatactaactcatgatctcgaagcgaaatcaatcggcccaccataatccaggaaaaaatcctgaaaggatatcgacaggtgggacagtggtgaaaac |
13528458 |
T |
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| Q |
119 |
aaaaatcatgttagaaaaggaaaaagctcaactcgaagaccacacatagtcgaagcacccaaacataaaag |
189 |
Q |
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| T |
13528457 |
agaaaacatgtca-aaaaagaaaaggctcatttaaaaaaccacccatagtcgaagcagcc-aacataaaag |
13528389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 106 - 144
Target Start/End: Complemental strand, 16621403 - 16621365
Alignment:
| Q |
106 |
cggtggtgaaaacaaaaatcatgttagaaaaggaaaaag |
144 |
Q |
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| T |
16621403 |
cggtggtgcaaacaaaaatcatgttagaaaaagaaaaag |
16621365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 129
Target Start/End: Original strand, 5222057 - 5222108
Alignment:
| Q |
78 |
aaacctcaaaggcattcgacatgtgggacggtggtgaaaacaaaaatcatgt |
129 |
Q |
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| T |
5222057 |
aaacctcaaagacattcgacagatgggatggtggtgaaaacgaaaatcatgt |
5222108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 412
Target Start/End: Original strand, 51485443 - 51485502
Alignment:
| Q |
353 |
cccctcttgatcagcttcagtccaccaagatatccgatgtcagatcccagtccagaattt |
412 |
Q |
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| T |
51485443 |
cccctcttgatcagctccagtccaccatgaaatccgacgtcaaatccgagtccaaaattt |
51485502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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