View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8399_low_2 (Length: 385)
Name: NF8399_low_2
Description: NF8399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8399_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 18 - 381
Target Start/End: Original strand, 3923521 - 3923884
Alignment:
| Q |
18 |
tccacatcgttcgaattattcaaattagttgtatatgtacccaaactcacattcacatgatcagctaatcttacttgctcaacgctcaagacaagttctt |
117 |
Q |
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| T |
3923521 |
tccacatcgttcgaattattcaaattagttgtatatgtacccaaactcacattcacatgatcagctaatcttacttgctcaacgctcaagacaagttctt |
3923620 |
T |
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| Q |
118 |
catcgaaaggctcttgtgtaacaaacatcaaatcctcattccaaaacggtttcgcgctcttttccttagaaaaactagttctcaaacaaaaactcttccc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3923621 |
catcgaaaggctcttgtgtaacaaacatcaaatcctcattccaaaacggtttcgcgctcttttccttagaaaaactagttctcaaacaaaaactcttccc |
3923720 |
T |
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| Q |
218 |
taaaccaacttggacaaacaattccgaactctcaggaggaaattgtagtaacaaatcgtctgcttgaatcacagtgacctttacatacctaagggaaggt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
3923721 |
taaaccaacttggacaaacaattccgaactctcaggaggaaattgtagtaacaaatggtgtgcttgaatcacagtgacctttacatacctaagggaaggt |
3923820 |
T |
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| Q |
318 |
gacatatataccttagaacgagtatagcaaacagaatcatcagttatctctgttgtatctgaac |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3923821 |
gacatatataccttagaacgagtatagcaaacagaatcatcagttatctctgttgtatctgaac |
3923884 |
T |
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