View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8399_low_3 (Length: 376)
Name: NF8399_low_3
Description: NF8399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8399_low_3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 17 - 376
Target Start/End: Original strand, 3923157 - 3923516
Alignment:
| Q |
17 |
aacatattgctcattccatcttggttcacggctgtcaacactggttcttgtccttacccattttggtccatatttcgccacacaatatgcatcggttctc |
116 |
Q |
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| T |
3923157 |
aacatattgctcattccatcttggttcacggctgtcaacacttgttcttgtccttacccattttggtccatatttcgccacacaatatgcatcggttctc |
3923256 |
T |
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| Q |
117 |
cccccaatcttcattggcatcaaattagttgcttttaagattccaagttccaaaacaccaatgcttggtggccaatgatctcttgatgaaggcctaaagt |
216 |
Q |
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| T |
3923257 |
cccccaatcttcattggcatcaaattagttgcttttaagattccaagttccaaaacaccaatgcttggtggccaatgatctcttgatgaaggcctaaagt |
3923356 |
T |
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| Q |
217 |
cgctactatattcgagaggctcgtccgacacatgataaccaccattcaaagaaatcctcaaatgaatcttactagcaaacttcacctcccttgcattctc |
316 |
Q |
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| T |
3923357 |
cactactatattcgagaggctcgtccgacacatgataaccaccattcaaagaaatcctcaaatgaatcttactagcaaacttcacctcccttgcattctc |
3923456 |
T |
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| Q |
317 |
aataattccaggcctattaagatccacccatctatcatctgcaggtacatcatcaaatct |
376 |
Q |
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| T |
3923457 |
aataattccaggcctattaagatccacccatctatcatctgcaggtacatcatcaaatct |
3923516 |
T |
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