View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8399_low_4 (Length: 248)
Name: NF8399_low_4
Description: NF8399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8399_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 15498380 - 15498609
Alignment:
| Q |
1 |
gctatatatctcagtgtagcatggtagttgtggttttgagatactgagatagaattttgattctgtcaatatctgttaagcatttcttgtgcttcttttg |
100 |
Q |
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| T |
15498380 |
gctatatatctcagtgtagcatggtagttgtggttttgagatactgagatagaattttgattctgtcaatatctgttaagcatttcttgtgcttcttttg |
15498479 |
T |
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| Q |
101 |
atagataatattaatcatatcaagggatgttgagtgcacaacttggactaattaccagataattgcctactaaaatgttagtaatatcatgttttgaaat |
200 |
Q |
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| T |
15498480 |
atagataatattaatcatatcaagggatgttaagtgcacaacttggactaa-caacagataattgcctactaaaatgttagtaatatcatgttttgaaat |
15498578 |
T |
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| Q |
201 |
cagaata-gatatatgagcacttgggcaaac |
230 |
Q |
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||||||| |||||||| || ||||||||||| |
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| T |
15498579 |
cagaataggatatatgtgcgcttgggcaaac |
15498609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 225
Target Start/End: Complemental strand, 32428599 - 32428488
Alignment:
| Q |
112 |
taatcatatcaagggatgttgagtgcacaacttggactaattaccagataattgcctactaaaatgttagtaatatcatgttttgaaatcagaata-gat |
210 |
Q |
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|||||| |||||||| |||| ||| |||||||||||||| ||| | | |||||| ||||||||||||||| ||||| ||| |||||||||||| ||| |
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| T |
32428599 |
taatcacatcaaggggtgttaagttcacaacttggactatctac---agagttgcctgctaaaatgttagtaacatcatatttggaaatcagaataggat |
32428503 |
T |
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| Q |
211 |
atatgagcacttggg |
225 |
Q |
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| T |
32428502 |
atgtgagcacttggg |
32428488 |
T |
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