View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8399_low_5 (Length: 231)
Name: NF8399_low_5
Description: NF8399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8399_low_5 |
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| [»] scaffold1089 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 8e-85; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 15497944 - 15498126
Alignment:
| Q |
1 |
gcacaaacttgttcggtaagtttcgtgtatatgtgtagaatccgctaaacaacgttatgtcgaggaattgcatatgttcttcactaacataacattgaat |
100 |
Q |
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| T |
15497944 |
gcacaaacttgttccgtaagtttcgtgtatatgtgtagaatccgctaaacaacgttaggtcgaggaattgcatatgttcttcactaacataacattgaat |
15498043 |
T |
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| Q |
101 |
cccacaattttcacctctcataccctagttgttcttaaacttgtgaagttacaacttgaagctgaaaatttgtgtgttcatct |
183 |
Q |
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| T |
15498044 |
cccacaattttcacctctcataccctagttgttctcaaacatgcgaggttacaacttgaagctgaaaatttgtgtgttcatct |
15498126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 15498328 - 15498379
Alignment:
| Q |
180 |
atctatattgttagtttcaatttcccttgatatttcaaccttcaaaagtttg |
231 |
Q |
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| T |
15498328 |
atctatattgttagtttcaatttcccttgatatttcaaccttcaaaagtttg |
15498379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 95 - 183
Target Start/End: Complemental strand, 28720838 - 28720750
Alignment:
| Q |
95 |
ttgaatcccacaattttcacctctcataccctagttgttcttaaacttgtgaagttacaacttgaagctgaaaatttgtgtgttcatct |
183 |
Q |
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| T |
28720838 |
ttgaatcccgcaattttcacctctcaaaccctagttgttttgaaacttgaaaaggttcaagttgaagcggaaactctgtgtgttgatct |
28720750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 183
Target Start/End: Original strand, 31261805 - 31261894
Alignment:
| Q |
94 |
attgaatcccacaattttcacctctcataccctagttgttcttaaacttgtgaagttacaacttgaagctgaaaatttgtgtgttcatct |
183 |
Q |
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| T |
31261805 |
attgaatcccacaattttaacctcccaaaccctagttattctgaaacttgagagattagtagttaaagctgaaaatttgtgtgttgatct |
31261894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 95 - 183
Target Start/End: Original strand, 25613646 - 25613734
Alignment:
| Q |
95 |
ttgaatcccacaattttcacctctcataccctagttgttcttaaacttgtgaagttacaacttgaagctgaaaatttgtgtgttcatct |
183 |
Q |
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| T |
25613646 |
ttgaatcctacaattttcacctccaaaaccctagttgttctgaaacttgagagattagtagttaaagctgaaaatttgtgtgttgatct |
25613734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 24112134 - 24112183
Alignment:
| Q |
94 |
attgaatcccacaattttcacctctcataccctagttgttcttaaacttg |
143 |
Q |
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| T |
24112134 |
attgaatcccataattttcacctctcaaaccctatttgttctcaaacttg |
24112183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1089 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1089
Description:
Target: scaffold1089; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 175
Target Start/End: Complemental strand, 1340 - 1268
Alignment:
| Q |
103 |
cacaattttcacctctcataccctagttgttcttaaacttgtgaagttacaacttgaagctgaaaatttgtgt |
175 |
Q |
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| T |
1340 |
cacaattttcacatgtcaaaccctagttgttctcaaacttgaatggttacaagttgaagttgaaaatttgtgt |
1268 |
T |
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