View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8400_high_2 (Length: 754)
Name: NF8400_high_2
Description: NF8400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8400_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 529; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 12 - 614
Target Start/End: Original strand, 47918429 - 47919021
Alignment:
| Q |
12 |
cagagacaaaataggggagatgaacctgttgagcctataaaggttcgaaaagcactcaaagggtgaccattccggcataattcaggtactaattaagctt |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47918429 |
cagagacaaaataggggagatgaacctgttgagcctataaaggttcgaaaagcactcaaagggtgaccattccggcataattcaggtactaattaagctt |
47918528 |
T |
|
| Q |
112 |
ttgaaattgctgctgcaatctatgatattataaaaaattgcagtcagagtattagtaatataaatcaagattatannnnnnnctttccattttctcacgt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || | | | |
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| T |
47918529 |
ttgaaattgctgctgcaatctatgatattataaaaaattgcagtcagagtattagtaatataaatcaagattatatt------tttttatgt----atat |
47918618 |
T |
|
| Q |
212 |
ttatttctgtccaattctatctgaagtgaaagagtttttatgtacaaactcttttttattgccggtgtattcttttgttccagacttgttatattctttg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47918619 |
ttatttctgtccaattctatctgaagtgaaagagtttttatgtataaactcttttttattgccggtgtattcttttgttccagacttgttatattctttg |
47918718 |
T |
|
| Q |
312 |
gtccattgaatctgtcaaatgcggcttatacattccattgtggtcgcagttgcaaagacatgaatattaaaacattgatgtcacagcctagattgcggtt |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47918719 |
gtccattgaatctgtcaaatgcggcttatacattccattgtggtcgcagttgcaaagacatgaatattaaaacattgatgtcacagcctagattgcggtt |
47918818 |
T |
|
| Q |
412 |
gcaaactctttaaaaagaaatgctaagtaggtcctagaagttaagtttattcttggggagatgagaatgaataactgatgtctgatgaatgatattttgc |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47918819 |
gcaaactctttaaaaagaaatgctaagtaggtcctagaagttaagtttattcttggggagatgagaatgaataactgatgtctgatgaatgatattttgc |
47918918 |
T |
|
| Q |
512 |
aggtgctgttgaaacctccaagtgacgaacctcttattggacatgttgatgatgcaaagcttattgacatgaccggtgttgatatccgtcttcccctttt |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47918919 |
aggtgctgttgaaacctccaagtgacgaacctcttattggacatgttgataatgcaaagcttattgacatgaccggtgttgatatccgtcttcccctttt |
47919018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 613 - 748
Target Start/End: Original strand, 47919180 - 47919315
Alignment:
| Q |
613 |
gtatgtgctttatgatggatcgtggtggtgatcgcctctgctatgtccaattcccccagaggtttgagggtattgatccctctgatagatatgctaatca |
712 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47919180 |
gtatgtgctttatgatggatcgtggtggggatcgcctctgctatgtccaattcccccagaggtttgagggtattgatccctctgatagatatgctaatca |
47919279 |
T |
|
| Q |
713 |
caacactgtcttctttgatgttagcatgagagccct |
748 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |
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|
| T |
47919280 |
caacactgtcttctttgatgttaacatgagagccct |
47919315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 263 - 326
Target Start/End: Original strand, 6932537 - 6932600
Alignment:
| Q |
263 |
ttttttattgccggtgtattcttttgttccagacttgttatattctttggtccattgaatctgt |
326 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||| |||||||||| ||| ||||||||||| |
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|
| T |
6932537 |
ttttttattgccaatatattcttttgttccagacttggtatattctttagtcaattgaatctgt |
6932600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 654 - 745
Target Start/End: Original strand, 44634356 - 44634447
Alignment:
| Q |
654 |
tatgtccaattcccccagaggtttgagggtattgatccctctgatagatatgctaatcacaacactgtcttctttgatgttagcatgagagc |
745 |
Q |
| |
|
||||| |||||||| || |||||||| |||||||| ||| |||| ||||||| || |||||||| || ||||||||||| ||||||||||| |
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|
| T |
44634356 |
tatgttcaattccctcaaaggtttgaaggtattgaccccagtgatcgatatgcaaaccacaacaccgtgttctttgatgtgagcatgagagc |
44634447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 4e-68; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 62 - 384
Target Start/End: Complemental strand, 29918694 - 29918375
Alignment:
| Q |
62 |
agcactcaaagggtgaccattccggcataattcaggtactaatta---agcttttgaaattgctgctgcaatctatgatattataaaaaattgcagtcag |
158 |
Q |
| |
|
||||||||| |||||||||| | ||||||||||||||||||| || | |||||||||||||||||| |||||||| ||||||||||| | |||| || |
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|
| T |
29918694 |
agcactcaaggggtgaccatgctggcataattcaggtactaagtactaaacttttgaaattgctgctgtgatctatgaaattataaaaaaattcagttag |
29918595 |
T |
|
| Q |
159 |
agtattagtaatataaatcaagattatannnnnnnctttccattttctcacgtttatttctgtccaattctatctgaagtgaaagagtttttatgtacaa |
258 |
Q |
| |
|
|| |||||||||||||||||||||| | ||||||||||||||| ||||| ||||||||||||| ||||||||| || |||||||||| || |
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|
| T |
29918594 |
agaattagtaatataaatcaagattcaaattat---tttccattttctcacacctatttatgtccaattctatgtgaagtgaa-gactttttatgtataa |
29918499 |
T |
|
| Q |
259 |
actcttttttattgccggtgtattcttttgttccagacttgttatattctttggtccattgaatctgtcaaatgcggcttatacattccattgtggtcgc |
358 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||||||| | ||| |||||||||||||| ||||||||||||| || ||||||| |||||| |
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|
| T |
29918498 |
actctttt--attgccgatgtattcttttgttccagacttgttatctggtttaatccattgaatctgttaaatgcggcttatgcaatccattgcggtcgc |
29918401 |
T |
|
| Q |
359 |
agttgcaaagacatgaatattaaaac |
384 |
Q |
| |
|
|||||||||||||| ||||| ||||| |
|
|
| T |
29918400 |
agttgcaaagacatcaatataaaaac |
29918375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 613 - 748
Target Start/End: Complemental strand, 29918050 - 29917915
Alignment:
| Q |
613 |
gtatgtgctttatgatggatcgtggtggtgatcgcctctgctatgtccaattcccccagaggtttgagggtattgatccctctgatagatatgctaatca |
712 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29918050 |
gtatgtgctttatgatggatcgtggtggtgatcgcctctgctatgtccaattccctcaaaggtttgagggtattgatccctctgatagatatgctaatca |
29917951 |
T |
|
| Q |
713 |
caacactgtcttctttgatgttagcatgagagccct |
748 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||| |
|
|
| T |
29917950 |
caacaccgtcttctttgatgttaacatgagagccct |
29917915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 493 - 614
Target Start/End: Complemental strand, 29918330 - 29918209
Alignment:
| Q |
493 |
ctgatgaatgatattttgcaggtgctgttgaaacctccaagtgacgaacctcttattggacatgttgatgatgcaaagcttattgacatgaccggtgttg |
592 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||| ||||| |
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|
| T |
29918330 |
ctgatgaatgatattttgcaggtgatgctgaaacctccaagtgacgaacctcttattggaaatgctgatgatgcaaagcttattgacctgaccgatgttg |
29918231 |
T |
|
| Q |
593 |
atatccgtcttcccctttttgt |
614 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
29918230 |
atatccgtcttccccttcttgt |
29918209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 29918803 - 29918750
Alignment:
| Q |
12 |
cagagacaaaataggggagatgaacctgttgagcctataaaggttcgaaaagca |
65 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29918803 |
cagagacaaaataggggtgatgaacctgttgagcctataaaggttcaaaaagca |
29918750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 263 - 326
Target Start/End: Original strand, 508599 - 508662
Alignment:
| Q |
263 |
ttttttattgccggtgtattcttttgttccagacttgttatattctttggtccattgaatctgt |
326 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||| |||||||||| ||| ||||||||||| |
|
|
| T |
508599 |
ttttttattgccaatatattcttttgttccagacttggtatattctttagtcaattgaatctgt |
508662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 263 - 324
Target Start/End: Original strand, 26291210 - 26291271
Alignment:
| Q |
263 |
ttttttattgccggtgtattcttttgttccagacttgttatattctttggtccattgaatct |
324 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||| |||||||||| ||| ||||||||| |
|
|
| T |
26291210 |
ttttttattgccaatatattcttttgttccagacttggtatattctttagtcaattgaatct |
26291271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 648 - 733
Target Start/End: Original strand, 15172139 - 15172224
Alignment:
| Q |
648 |
ctctgctatgtccaattcccccagaggtttgagggtattgatccctctgatagatatgctaatcacaacactgtcttctttgatgt |
733 |
Q |
| |
|
||||||||||||||||| || || || ||||| |||||||||| |||||||||||||||| ||||||||| ||||||||||| |
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|
| T |
15172139 |
ctctgctatgtccaatttcctcaaagatttgatggtattgatcgtcacgatagatatgctaatcgcaacactgttttctttgatgt |
15172224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 279 - 324
Target Start/End: Original strand, 18290936 - 18290981
Alignment:
| Q |
279 |
tattcttttgttccagacttgttatattctttggtccattgaatct |
324 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||| ||||||||| |
|
|
| T |
18290936 |
tattcttttgttccaaacttgttatattctttagtcaattgaatct |
18290981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 669 - 730
Target Start/End: Complemental strand, 15418590 - 15418529
Alignment:
| Q |
669 |
cagaggtttgagggtattgatccctctgatagatatgctaatcacaacactgtcttctttga |
730 |
Q |
| |
|
||||| ||||| || ||||||||||| ||| ||||||| ||||| ||||| ||||||||||| |
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|
| T |
15418590 |
cagagatttgaagggattgatccctcggatcgatatgcaaatcataacacagtcttctttga |
15418529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 663 - 748
Target Start/End: Complemental strand, 14597643 - 14597558
Alignment:
| Q |
663 |
ttcccccagaggtttgagggtattgatccctctgatagatatgctaatcacaacactgtcttctttgatgttagcatgagagccct |
748 |
Q |
| |
|
|||||||| || ||||| |||||||||||||| ||| | ||||| |||||||||||||| |||||||| | | |||||||||||| |
|
|
| T |
14597643 |
ttcccccaaagatttgaaggtattgatccctcggatcgctatgccaatcacaacactgtattctttgacggaaacatgagagccct |
14597558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 675 - 748
Target Start/End: Original strand, 14610874 - 14610947
Alignment:
| Q |
675 |
tttgagggtattgatccctctgatagatatgctaatcacaacactgtcttctttgatgttagcatgagagccct |
748 |
Q |
| |
|
||||| |||||||||||||| ||| | ||||| ||||||||||| || |||||||| | | |||||||||||| |
|
|
| T |
14610874 |
tttgaaggtattgatccctcagatcgctatgccaatcacaacaccgtgttctttgacgggaacatgagagccct |
14610947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 649 - 733
Target Start/End: Complemental strand, 41490668 - 41490584
Alignment:
| Q |
649 |
tctgctatgtccaattcccccagaggtttgagggtattgatccctctgatagatatgctaatcacaacactgtcttctttgatgt |
733 |
Q |
| |
|
|||||||||| ||||| ||||| || ||||| || ||||| || || ||| | ||||| |||||||||||||||||||||||||| |
|
|
| T |
41490668 |
tctgctatgttcaatttccccaaagatttgaaggaattgacccatcagatcggtatgccaatcacaacactgtcttctttgatgt |
41490584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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