View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8400_high_4 (Length: 423)
Name: NF8400_high_4
Description: NF8400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8400_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 15 - 407
Target Start/End: Complemental strand, 22010458 - 22010066
Alignment:
| Q |
15 |
gatgaagtgtgcgttgatttggaaatcatcgtctgaaactatggcgaagtttcctcctttggctccatggaagtagaacatcacaccatctccaccaaca |
114 |
Q |
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| T |
22010458 |
gatgaagtgtgcattgatttggaaatcatcgtctgaaactatggcgaagtttcctcctttggctccatggaagtagaacatcacaccgtctccaccaaca |
22010359 |
T |
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| Q |
115 |
aatcgaggatcgtaacacaatgaaccgtagccatcacagtttggtcttctaactgcaaaagaatcaaccaaactcaacatgagtttaaagactatgcaat |
214 |
Q |
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| T |
22010358 |
aatcgaggatcgtaacacaatgaaccgtagccatcacagtttggtcttctaactgcaaaagaatcaaccaaactcaacatgagtttaaagactatgcaat |
22010259 |
T |
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| Q |
215 |
gctattaaaacatttttacaccttcctctaaccagatttcacactaatgtcactttgttatattattttcaaaaatatctcaacaaacatctatatgggt |
314 |
Q |
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| T |
22010258 |
gctattaaaacatttttacaccttcctctaaccagatttcacactaatgtcactttgttatattattttcaaaaatatctcaacaaacatctatatgggt |
22010159 |
T |
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| Q |
315 |
agacttaataaaatttacactgtcaatatgtagttttatattctagaatattacctgcaatcattatctaattaaatcaatgcatgtttatat |
407 |
Q |
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| T |
22010158 |
agacttaataaaatttacactgtcaatatgtagttttatattctagaatattacctgcaatcattatctaattaaatcaatgcatgtttatat |
22010066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 15 - 177
Target Start/End: Complemental strand, 21993239 - 21993077
Alignment:
| Q |
15 |
gatgaagtgtgcgttgatttggaaatcatcgtctgaaactatggcgaagtttcctcctttggctccatggaagtagaacatcacaccatctccaccaaca |
114 |
Q |
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|||||||||||| ||||||||||| || ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
21993239 |
gatgaagtgtgcattgatttggaattcgtcgtctgaaactatggcaaagtttcctcctttggctccgtggaagtagaacatcacaccgtctccaccaaca |
21993140 |
T |
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| Q |
115 |
aatcgaggatcgtaacacaatgaaccgtagccatcacagtttggtcttctaactgcaaaagaa |
177 |
Q |
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|| ||||||||||| |||||||| ||||| ||||||||||||| ||||||||||||||||||| |
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| T |
21993139 |
aagcgaggatcgtagcacaatgatccgtaaccatcacagtttgctcttctaactgcaaaagaa |
21993077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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