View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8400_high_6 (Length: 372)
Name: NF8400_high_6
Description: NF8400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8400_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 35875696 - 35875345
Alignment:
| Q |
1 |
ggtagattgttattataaaaatgaaaagttaatttgagttttttcatcaaaacatttccagtctcttgaatgtactgaatgtttggatagttgtatgtca |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35875696 |
ggtagattgttattataaaaatggaaagttaatttgagttttttcatcaaaacatctccagtctcttgaatgtactgaatgtttggatagttgtatgtca |
35875597 |
T |
|
| Q |
101 |
tgagagagtttttgcaattttctcatgcaagacttataattgagaggtttgcgattttgttcttttgaaaattgcaattgtgtgaaagttaaagagaatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
35875596 |
tgagagagtttttgcaattttctcatgcaagacttataattgagaggtttgcaattttgttcttttgaaaattgcaattgtgtgaaagtt-aagaatatt |
35875498 |
T |
|
| Q |
201 |
tgtaattttataaatatttgcaattttcatatatattttgcttcttttatggttgtgttaccgctttgtagaagtttccttttgtggatttcctaacgct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
35875497 |
tgtaattttataaatatttgcaattttcatatatattttgcttcttttatggttgtgttaccgctttgtagaagtttctttttgtggatttcctaacgct |
35875398 |
T |
|
| Q |
301 |
cttatatatctaatatcgaatccattggcattctctccttaataggtggtacc |
353 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
35875397 |
cttatatatctaatattgaatccattggcattctctccttaataggtggtacc |
35875345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 111 - 185
Target Start/End: Original strand, 1649047 - 1649121
Alignment:
| Q |
111 |
tttgcaattttctcatgcaagacttataattgagaggtttgcgattttgttcttttgaaaattgcaattgtgtga |
185 |
Q |
| |
|
|||| |||||| || ||||| | ||| ||||||||||||||||||| ||||||| | |||||||||||||||||| |
|
|
| T |
1649047 |
tttgtaattttatcgtgcaaaaattaaaattgagaggtttgcgattatgttcttataaaaattgcaattgtgtga |
1649121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University