View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8400_low_10 (Length: 245)

Name: NF8400_low_10
Description: NF8400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8400_low_10
NF8400_low_10
[»] chr2 (7 HSPs)
chr2 (117-245)||(18908505-18908633)
chr2 (126-245)||(18913262-18913381)
chr2 (29-117)||(18912334-18912422)
chr2 (5-97)||(18919673-18919764)
chr2 (117-245)||(18920467-18920588)
chr2 (151-191)||(20712293-20712333)
chr2 (151-191)||(21021047-21021087)
[»] chr7 (12 HSPs)
chr7 (118-207)||(19358191-19358280)
chr7 (129-216)||(19779874-19779961)
chr7 (129-191)||(19350810-19350872)
chr7 (115-216)||(19887408-19887509)
chr7 (143-192)||(22524932-22524981)
chr7 (9-120)||(14739006-14739117)
chr7 (144-194)||(21218467-21218517)
chr7 (150-202)||(19645454-19645506)
chr7 (5-73)||(19781208-19781279)
chr7 (151-192)||(22534885-22534926)
chr7 (148-192)||(7310970-7311014)
chr7 (137-189)||(15571632-15571684)
[»] chr3 (2 HSPs)
chr3 (115-192)||(12734505-12734582)
chr3 (129-216)||(32578573-32578660)
[»] scaffold0464 (1 HSPs)
scaffold0464 (115-192)||(8357-8434)
[»] chr6 (4 HSPs)
chr6 (115-216)||(14749645-14749746)
chr6 (129-189)||(6921076-6921136)
chr6 (148-189)||(6942712-6942753)
chr6 (129-189)||(6934959-6935019)
[»] chr5 (3 HSPs)
chr5 (9-97)||(17587094-17587182)
chr5 (146-192)||(42298374-42298420)
chr5 (144-197)||(24330613-24330666)
[»] scaffold0128 (2 HSPs)
scaffold0128 (143-194)||(25879-25930)
scaffold0128 (146-192)||(4400-4446)
[»] chr8 (1 HSPs)
chr8 (151-192)||(27618724-27618765)
[»] chr4 (2 HSPs)
chr4 (129-192)||(53775098-53775161)
chr4 (146-192)||(2911332-2911378)
[»] chr1 (2 HSPs)
chr1 (144-197)||(21855097-21855150)
chr1 (6-42)||(31442231-31442267)
[»] scaffold0097 (1 HSPs)
scaffold0097 (151-191)||(16132-16172)


Alignment Details
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 117 - 245
Target Start/End: Original strand, 18908505 - 18908633
Alignment:
Q  117 aaaatcaattagaacaattaaatcattgaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatcattggtattaaaccatgatatttc 216  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  18908505 aaaatcaattagaacaattaaatcatcgaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatcattggtattaaaccatgatatttg 18908604  T
Q  217 tttgctagttgcaatttgctcaactttat 245  Q
    |||||||||||||||||| ||||||||||    
T  18908605 tttgctagttgcaatttgttcaactttat 18908633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 126 - 245
Target Start/End: Original strand, 18913262 - 18913381
Alignment:
Q  126 tagaacaattaaatcattgaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatcattggtattaaaccatgatatttctttgctagt 225  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||  ||||||| ||||||  |||| |  ||| ||||    
T  18913262 tagaacaattaaatcattgaagagaaacttactttcaagaggttgataccaagctttcaacataattcttggtatgaaaccacaatatgttattgttagt 18913361  T
Q  226 tgcaatttgctcaactttat 245  Q
    ||||||||||||||||||||    
T  18913362 tgcaatttgctcaactttat 18913381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 18912334 - 18912422
Alignment:
Q  29 ttcctttgtgaaaagagtaatagagaaattagcttcaaccttgatgaatataagccagtaccacaagtggcacgacgattatgatatta 117  Q
    |||||| ||||||| | |||||||||||||||||||||||| ||||  || |||||| | ||||| ||| ||| ||| |||||||||||    
T  18912334 ttccttcgtgaaaataataatagagaaattagcttcaacctcgatgcctaaaagccaatgccacaggtgacaccacggttatgatatta 18912422  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 18919673 - 18919764
Alignment:
Q  5 ataattctcaaaagtgcagctacattcctttgtgaaaagagtaatagagaaattagcttcaaccttgatgaatataagccagtaccacaagtg 97  Q
    |||||| ||||||||||||  |  ||||||||| | || | |||||||||| |||||||||||||||| |  || ||||||||||||||||||    
T  18919673 ataattgtcaaaagtgcagtcatgttcctttgtaagaaaa-taatagagaagttagcttcaaccttgacgcctaaaagccagtaccacaagtg 18919764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 245
Target Start/End: Original strand, 18920467 - 18920588
Alignment:
Q  117 aaaatcaattagaacaattaaatcattgaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatcattggtattaaaccatgatatttc 216  Q
    ||||| |||||||| || |||||||||||||| |||||||| |       | ||||| |||||||||||||||||  || |||| ||||||   |||||     
T  18920467 aaaattaattagaataactaaatcattgaagataaacttacat-------ggtgaaatcaagctttcaacataattctttgtatgaaaccacattatttg 18920559  T
Q  217 tttgctagttgcaatttgctcaactttat 245  Q
     |||  |||||||||||||||||||||||    
T  18920560 attgtaagttgcaatttgctcaactttat 18920588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 20712293 - 20712333
Alignment:
Q  151 aacttactttcaagaggttgaaaccaagctttcaacataat 191  Q
    ||||||||||||| | ||||||||||||||||| |||||||    
T  20712293 aacttactttcaacaagttgaaaccaagctttcgacataat 20712333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 21021047 - 21021087
Alignment:
Q  151 aacttactttcaagaggttgaaaccaagctttcaacataat 191  Q
    ||||||||||||| | ||||||||||| |||||||||||||    
T  21021047 aacttactttcaacaagttgaaaccaaactttcaacataat 21021087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 118 - 207
Target Start/End: Complemental strand, 19358280 - 19358191
Alignment:
Q  118 aaatcaattagaacaattaaatcattgaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatcattggtattaaacca 207  Q
    |||| |||| ||||||||||||||| ||||| |||||||||||||||||| |||||| ||||||||||||||||| ||||||| ||||||    
T  19358280 aaataaatttgaacaattaaatcatagaagagaaacttactttcaagaggatgaaactaagctttcaacataatctttggtataaaacca 19358191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 129 - 216
Target Start/End: Complemental strand, 19779961 - 19779874
Alignment:
Q  129 aacaattaaatcattgaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatcattggtattaaaccatgatatttc 216  Q
    |||| ||||||||||||||| ||||||||| |||| |||||||||| ||||||||||||||||| ||||||| ||||||  |||||||    
T  19779961 aacagttaaatcattgaagagaaacttactctcaaaaggttgaaactaagctttcaacataatccttggtatgaaaccacaatatttc 19779874  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 129 - 191
Target Start/End: Original strand, 19350810 - 19350872
Alignment:
Q  129 aacaattaaatcattgaagaaaaacttactttcaagaggttgaaaccaagctttcaacataat 191  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||    
T  19350810 aacaattaaatcattaaagagaaacttactttcaagaggttgaaactaagctttcaacataat 19350872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 115 - 216
Target Start/End: Original strand, 19887408 - 19887509
Alignment:
Q  115 ttaaaatcaattagaacaattaaatcattgaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatcattggtattaaaccatgatatt 214  Q
    ||||||| ||||  |||||||||||||||||| | ||||||||| |||| || ||||||| ||||||||||||||||| ||||||| ||||||  |||||    
T  19887408 ttaaaattaattcaaacaattaaatcattgaatagaaacttactctcaaaagattgaaactaagctttcaacataatccttggtatgaaaccacaatatt 19887507  T
Q  215 tc 216  Q
    ||    
T  19887508 tc 19887509  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 192
Target Start/End: Original strand, 22524932 - 22524981
Alignment:
Q  143 tgaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatc 192  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  22524932 tgaagaagaacttactttcaagaagttgaaaccaagctttcaacataatc 22524981  T

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Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 120
Target Start/End: Complemental strand, 14739117 - 14739006
Alignment:
Q  9 ttctcaaaagtgcagctacattcctttgtgaaaagagtaatagagaaattagcttcaaccttgatgaatataagccagtaccacaagtggcacgacgatt 108  Q
    |||||||||||||||| |||||| ||| |||||||| ||||| |||||||||||| || ||| |||  || |||| ||||||| ||||| ||| |   ||    
T  14739117 ttctcaaaagtgcagcaacattcttttttgaaaagaataataaagaaattagcttgaaactttatgcctaaaagctagtaccataagtgacacaattgtt 14739018  T
Q  109 atgatattaaaa 120  Q
    ||||||||||||    
T  14739017 atgatattaaaa 14739006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 21218467 - 21218517
Alignment:
Q  144 gaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatcat 194  Q
    |||||| ||||||||||||||| ||||||||||||||||| ||||||||||    
T  21218467 gaagaagaacttactttcaagaagttgaaaccaagctttcgacataatcat 21218517  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 19645454 - 19645506
Alignment:
Q  150 aaacttactttcaagaggttgaaaccaagctttcaacataatcattggtatta 202  Q
    |||||||||||||| | ||||||||||| |||||||||||||| |||| ||||    
T  19645454 aaacttactttcaacaagttgaaaccaaactttcaacataatccttggaatta 19645506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 19781279 - 19781208
Alignment:
Q  5 ataattctcaaaagtgcagctacattcctttgtg---aaaagagtaatagagaaattagcttcaaccttgat 73  Q
    |||||||||||||||| ||| |||||||||| ||   |||| | ||||| ||||||||||||||||| ||||    
T  19781279 ataattctcaaaagtgaagccacattcctttctgaaaaaaataataataaagaaattagcttcaaccgtgat 19781208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 192
Target Start/End: Complemental strand, 22534926 - 22534885
Alignment:
Q  151 aacttactttcaagaggttgaaaccaagctttcaacataatc 192  Q
    ||||||||||||||| | ||||||||||||||| ||||||||    
T  22534926 aacttactttcaagaaggtgaaaccaagctttcgacataatc 22534885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 7310970 - 7311014
Alignment:
Q  148 aaaaacttactttcaagaggttgaaaccaagctttcaacataatc 192  Q
    |||||||||||||||| ||||||||||||  ||||| ||||||||    
T  7310970 aaaaacttactttcaataggttgaaaccagactttcgacataatc 7311014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 15571632 - 15571684
Alignment:
Q  137 aatcattgaagaaaaacttactttcaagaggttgaaaccaagctttcaacata 189  Q
    |||||| ||| ||||||||||||||| || || || |||||||||||||||||    
T  15571632 aatcatcgaacaaaaacttactttcaggaagtcgataccaagctttcaacata 15571684  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 12734505 - 12734582
Alignment:
Q  115 ttaaaatcaattagaacaattaaatcattgaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatc 192  Q
    ||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||    
T  12734505 ttaaaattaattagaactattaaatcattgaagagaaacttactttcaagaggttgaaactaagctttcaaaataatc 12734582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 129 - 216
Target Start/End: Original strand, 32578573 - 32578660
Alignment:
Q  129 aacaattaaatcattgaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatcattggtattaaaccatgatatttc 216  Q
    |||||||||||||||||||| ||||||||| |||| |||||||||  ||||||||||||||| | ||||||| ||||||  |||||||    
T  32578573 aacaattaaatcattgaagagaaacttactctcaaaaggttgaaaataagctttcaacataagccttggtatgaaaccacaatatttc 32578660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 115 - 192
Target Start/End: Complemental strand, 8434 - 8357
Alignment:
Q  115 ttaaaatcaattagaacaattaaatcattgaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatc 192  Q
    ||||||| ||||||||| ||||||| ||| |||| ||||||||||||||||||||||||| |||||||||| ||||||    
T  8434 ttaaaattaattagaactattaaattattaaagagaaacttactttcaagaggttgaaactaagctttcaaaataatc 8357  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 115 - 216
Target Start/End: Complemental strand, 14749746 - 14749645
Alignment:
Q  115 ttaaaatcaattagaacaattaaatcattgaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatcattggtattaaaccatgatatt 214  Q
    ||||||| ||||  || ||||||||||||||||| ||||||||||||||||| ||||||  |||||||||||| |||| ||||||| ||||||  |||||    
T  14749746 ttaaaattaattcaaaaaattaaatcattgaagagaaacttactttcaagagcttgaaattaagctttcaacaaaatccttggtataaaaccacaatatt 14749647  T
Q  215 tc 216  Q
    ||    
T  14749646 tc 14749645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 189
Target Start/End: Original strand, 6921076 - 6921136
Alignment:
Q  129 aacaattaaatcattgaagaaaaacttactttcaagaggttgaaaccaagctttcaacata 189  Q
    ||||| |||||||| ||| |||||||||||||||||| || || |||||||||||||||||    
T  6921076 aacaagtaaatcatcgaacaaaaacttactttcaagaagtcgataccaagctttcaacata 6921136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 6942712 - 6942753
Alignment:
Q  148 aaaaacttactttcaagaggttgaaaccaagctttcaacata 189  Q
    |||||||||||||||||| ||||| |||||||||||||||||    
T  6942712 aaaaacttactttcaagaagttgataccaagctttcaacata 6942753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 189
Target Start/End: Original strand, 6934959 - 6935019
Alignment:
Q  129 aacaattaaatcattgaagaaaaacttactttcaagaggttgaaaccaagctttcaacata 189  Q
    ||||| |||||||||||||| ||| |||| ||||||| || || ||||| |||||||||||    
T  6934959 aacaagtaaatcattgaagagaaaattaccttcaagaagtcgataccaaactttcaacata 6935019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 17587094 - 17587182
Alignment:
Q  9 ttctcaaaagtgcagctacattcctttgtgaaaagagtaatagagaaattagcttcaaccttgatgaatataagccagtaccacaagtg 97  Q
    |||||||||||||||| |||||| ||| |||||||||||||| |||||||||||| || |||||||  || |||| ||||||| |||||    
T  17587094 ttctcaaaagtgcagcaacattcttttttgaaaagagtaataaagaaattagcttgaaacttgatgcctaaaagctagtaccataagtg 17587182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 192
Target Start/End: Complemental strand, 42298420 - 42298374
Alignment:
Q  146 agaaaaacttactttcaagaggttgaaaccaagctttcaacataatc 192  Q
    |||| ||||||||||||||| ||||||||||||||||| ||||||||    
T  42298420 agaagaacttactttcaagaagttgaaaccaagctttcgacataatc 42298374  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 24330613 - 24330666
Alignment:
Q  144 gaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatcattgg 197  Q
    ||||| |||||||||||||| |  ||| ||| ||||||||||||||||||||||    
T  24330613 gaagagaaacttactttcaaaaacttggaactaagctttcaacataatcattgg 24330666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 194
Target Start/End: Complemental strand, 25930 - 25879
Alignment:
Q  143 tgaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatcat 194  Q
    ||||||||||||||||||||| || || ||||||||||||| ||||||||||    
T  25930 tgaagaaaaacttactttcaacagattaaaaccaagctttcgacataatcat 25879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 192
Target Start/End: Complemental strand, 4446 - 4400
Alignment:
Q  146 agaaaaacttactttcaagaggttgaaaccaagctttcaacataatc 192  Q
    |||| ||||||||||||||| ||||||||||||||||| ||||||||    
T  4446 agaagaacttactttcaagaagttgaaaccaagctttcgacataatc 4400  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 192
Target Start/End: Complemental strand, 27618765 - 27618724
Alignment:
Q  151 aacttactttcaagaggttgaaaccaagctttcaacataatc 192  Q
    |||||||||||||||  |||||||||||||||||||||||||    
T  27618765 aacttactttcaagaaattgaaaccaagctttcaacataatc 27618724  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 53775161 - 53775098
Alignment:
Q  129 aacaattaaatcattgaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatc 192  Q
    ||||| |||||| | |||||  ||||||||||||| | ||||| ||||||||||||||||||||    
T  53775161 aacaagtaaatcttggaagaggaacttactttcaacacgttgataccaagctttcaacataatc 53775098  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 192
Target Start/End: Complemental strand, 2911378 - 2911332
Alignment:
Q  146 agaaaaacttactttcaagaggttgaaaccaagctttcaacataatc 192  Q
    |||| ||||||||||||||| ||||| ||||||||||| ||||||||    
T  2911378 agaagaacttactttcaagaagttgataccaagctttctacataatc 2911332  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 21855097 - 21855150
Alignment:
Q  144 gaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatcattgg 197  Q
    ||||| |||||||||||||| |  ||| ||| ||||||||||||||||||||||    
T  21855097 gaagagaaacttactttcaaaaacttggaactaagctttcaacataatcattgg 21855150  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 31442231 - 31442267
Alignment:
Q  6 taattctcaaaagtgcagctacattcctttgtgaaaa 42  Q
    ||||||||||||||||||||| || ||||||||||||    
T  31442231 taattctcaaaagtgcagctatatccctttgtgaaaa 31442267  T

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Target: scaffold0097 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 16132 - 16172
Alignment:
Q  151 aacttactttcaagaggttgaaaccaagctttcaacataat 191  Q
    ||||||||||||| | ||||||||||||||||| |||||||    
T  16132 aacttactttcaacaagttgaaaccaagctttcgacataat 16172  T

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