View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8400_low_11 (Length: 217)

Name: NF8400_low_11
Description: NF8400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8400_low_11
NF8400_low_11
[»] chr2 (6 HSPs)
chr2 (1-217)||(18913383-18913599)
chr2 (1-217)||(18908635-18908851)
chr2 (1-216)||(18920591-18920807)
chr2 (1-61)||(22051731-22051791)
chr2 (1-41)||(554504-554544)
chr2 (1-41)||(14514928-14514968)
[»] chr3 (3 HSPs)
chr3 (2-161)||(12734672-12734831)
chr3 (2-166)||(32578739-32578906)
chr3 (9-54)||(3625770-3625815)
[»] scaffold0464 (1 HSPs)
scaffold0464 (2-166)||(8090-8254)
[»] chr7 (17 HSPs)
chr7 (2-217)||(19779631-19779840)
chr7 (2-166)||(19887588-19887752)
chr7 (1-217)||(19357938-19358148)
chr7 (1-160)||(19722046-19722211)
chr7 (1-61)||(19351051-19351111)
chr7 (3-54)||(660836-660887)
chr7 (2-54)||(24002228-24002280)
chr7 (94-160)||(19350976-19351042)
chr7 (1-47)||(22028656-22028702)
chr7 (1-54)||(6864796-6864849)
chr7 (1-54)||(14076706-14076759)
chr7 (1-54)||(14386734-14386787)
chr7 (5-54)||(24010415-24010464)
chr7 (1-54)||(29454092-29454145)
chr7 (1-53)||(19344565-19344617)
chr7 (1-41)||(22100521-22100561)
chr7 (9-61)||(29874547-29874599)
[»] chr6 (5 HSPs)
chr6 (1-39)||(14749425-14749463)
chr6 (1-54)||(17369692-17369745)
chr6 (1-41)||(6921352-6921392)
chr6 (1-41)||(6935220-6935260)
chr6 (1-41)||(6947882-6947922)
[»] chr4 (2 HSPs)
chr4 (1-52)||(53774868-53774919)
chr4 (14-54)||(53790594-53790634)
[»] chr5 (3 HSPs)
chr5 (1-51)||(29597544-29597594)
chr5 (14-51)||(29647717-29647754)
chr5 (14-51)||(29642400-29642437)
[»] scaffold0867 (1 HSPs)
scaffold0867 (1-41)||(4671-4711)


Alignment Details
Target: chr2 (Bit Score: 177; Significance: 1e-95; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 18913599 - 18913383
Alignment:
Q  1 tggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttcatattgatcatggcattggtgattggcttgcatatggttctcaattg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||  | ||||||||    
T  18913599 tggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttcatattgattatggcattggtgatagccttgcatattatgctcaattg 18913500  T
Q  101 ttcttgttaccattgtatgtttctgagagtagcaacacactggtaatggcaagcaatcaacgaggcctcatttatggctatgaccgccaacatgcaattc 200  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  18913499 ttcttgttaccattatgtgtttctgagagtagcaacacactggtaatggcaagcaatcaacgaggcctcattcatggctatcaccgccaacatgcaattc 18913400  T
Q  201 tctataattggagagat 217  Q
    |||||||||||||||||    
T  18913399 tctataattggagagat 18913383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 18908851 - 18908635
Alignment:
Q  1 tggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttcatattgatcatggcattggtgattggcttgcatatggttctcaattg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||  | ||||||||    
T  18908851 tggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttcatattgattatggcattggtgatagccttgcatattatgctcaattg 18908752  T
Q  101 ttcttgttaccattgtatgtttctgagagtagcaacacactggtaatggcaagcaatcaacgaggcctcatttatggctatgaccgccaacatgcaattc 200  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||    
T  18908751 ttcttgttaccattatgtgtttctgagagtagcaacacactggtaatggcaagcaatcaacgaggcctcattcatggctatcaccgccgacatgcaattc 18908652  T
Q  201 tctataattggagagat 217  Q
    | |||||||||||||||    
T  18908651 tttataattggagagat 18908635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 18920807 - 18920591
Alignment:
Q  1 tggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttcatattgatcatggcattggtgattggcttgcatatggttctcaattg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| | |||||||||  | ||||||||    
T  18920807 tggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttcatattgattatggcattagtgatagccttgcatattatgctcaattg 18920708  T
Q  101 ttcttgttaccattgtatgtttctgaga-gtagcaacacactggtaatggcaagcaatcaacgaggcctcatttatggctatgaccgccaacatgcaatt 199  Q
    |||||||||||||| | ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  18920707 ttcttgttaccattatgtgtttctgagacgtagcaacacactgataatggcaagcaatcaacgaggcctcattcatggctataaccgccaacatgcaatt 18920608  T
Q  200 ctctataattggagaga 216  Q
    |||||||||||||||||    
T  18920607 ctctataattggagaga 18920591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 22051791 - 22051731
Alignment:
Q  1 tggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttcatattgat 61  Q
    |||||||||||| | ||||||||||||  |||||||||||| ||| |||||||| ||||||    
T  22051791 tggagttcaagaatattggactcaatttttcaaaattagttatcagaatcttcaaattgat 22051731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 554504 - 554544
Alignment:
Q  1 tggagttcaagagtcttggactcaattcctcaaaattagtt 41  Q
    ||||||| ||||||||||||||||||| || ||||||||||    
T  554504 tggagttaaagagtcttggactcaattacttaaaattagtt 554544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 14514928 - 14514968
Alignment:
Q  1 tggagttcaagagtcttggactcaattcctcaaaattagtt 41  Q
    ||||||| |||| ||||||||||||||||| ||||||||||    
T  14514928 tggagttgaagattcttggactcaattccttaaaattagtt 14514968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 2 - 161
Target Start/End: Complemental strand, 12734831 - 12734672
Alignment:
Q  2 ggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttcatattgatcatggcattggtgattggcttgcatatggttctcaattgt 101  Q
    ||||||||||| ||||||| |||||| |||||||||||||||||  ||||||| |||||| |||||||  ||||||  || | |||||||||||||||||    
T  12734831 ggagttcaagattcttggattcaatttctcaaaattagttttcaggatcttcaaattgattatggcatcagtgatttactggaatatggttctcaattgt 12734732  T
Q  102 tcttgttaccattgtatgtttctgagagtagcaacacactggtaatggcaagcaatcaac 161  Q
    ||||||| || |||||  |||||||||||  |||||||||  ||||||||||||||||||    
T  12734731 tcttgtttccgttgtacctttctgagagtgacaacacacttataatggcaagcaatcaac 12734672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 2 - 166
Target Start/End: Complemental strand, 32578906 - 32578739
Alignment:
Q  2 ggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttcatattgatcatggcattggtgattggcttgcat---atggttctcaat 98  Q
    |||||||| ||||||||||||||||||||||| |||||||||||  | ||||| |||||| |||||||| ||||||  || | ||   ||||||||||||    
T  32578906 ggagttcacgagtcttggactcaattcctcaagattagttttcaggaccttcaaattgattatggcattagtgattcactggaatatgatggttctcaat 32578807  T
Q  99 tgttcttgttaccattgtatgtttctgagagtagcaacacactggtaatggcaagcaatcaacgaggc 166  Q
    |||||||||  ||||||||  |||| ||||||  |  ||||||  |||||||||||||||||| ||||    
T  32578806 tgttcttgtatccattgtacctttccgagagtgacggcacacttataatggcaagcaatcaacaaggc 32578739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 3625770 - 3625815
Alignment:
Q  9 aagagtcttggactcaattcctcaaaattagttttcaaaatcttca 54  Q
    ||||||||||||||||||| || |||||||||| ||||||||||||    
T  3625770 aagagtcttggactcaatttcttaaaattagttatcaaaatcttca 3625815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 166
Target Start/End: Original strand, 8090 - 8254
Alignment:
Q  2 ggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttcatattgatcatggcattggtgattggcttgcatatggttctcaattgt 101  Q
    ||||||||||| ||||||| |||||| |||||||||||||||||  ||||||| |||||| |||||||| ||||||  || |  ||||||||||||||||    
T  8090 ggagttcaagattcttggattcaatttctcaaaattagttttcaggatcttcaaattgattatggcattagtgattcactagagtatggttctcaattgt 8189  T
Q  102 tcttgttaccattgtatgtttctgagagtagcaacacactggtaatggcaagcaatcaacgaggc 166  Q
    ||||||| || |||||  | |||||||||  |||||||||  |||||||||||||||||| ||||    
T  8190 tcttgtttccgttgtacctctctgagagtgacaacacacttataatggcaagcaatcaacaaggc 8254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 6e-33; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 2 - 217
Target Start/End: Original strand, 19779631 - 19779840
Alignment:
Q  2 ggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttcatattgatcatggcattggtgattggcttgcatatggttctcaattgt 101  Q
    ||||||||||| ||||||||||||||||||||||||||||||||  | ||||| |||||| |||||||| ||||||  || |  ||||||||||||||||    
T  19779631 ggagttcaagactcttggactcaattcctcaaaattagttttcaggaccttcaaattgattatggcattagtgattcactggattatggttctcaattgt 19779730  T
Q  102 tcttgttaccattgtatgtttctgagagtagcaacacactggtaatggcaagcaatcaacgaggcctcatttatggctatgaccgccaacatgcaattct 201  Q
      ||||  ||||||||  |||||||||||  |||||||||  |||||||||||||||||  ||||| |    |||| |||||   | | |||||||||||    
T  19779731 atttgtatccattgtacctttctgagagtgacaacacacttataatggcaagcaatcaagaaggccac---gatggttatga---caaccatgcaattct 19779824  T
Q  202 ctataattggagagat 217  Q
    ||||||||||||||||    
T  19779825 ctataattggagagat 19779840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 2 - 166
Target Start/End: Complemental strand, 19887752 - 19887588
Alignment:
Q  2 ggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttcatattgatcatggcattggtgattggcttgcatatggttctcaattgt 101  Q
    ||||||||||| ||||||||||||||||||||||||||||||||  | ||||| |||||| |||||||| ||||||  || |  ||||||||||||||||    
T  19887752 ggagttcaagactcttggactcaattcctcaaaattagttttcaggaccttcaaattgattatggcattagtgattcactggactatggttctcaattgt 19887653  T
Q  102 tcttgttaccattgtatgtttctgagagtagcaacacactggtaatggcaagcaatcaacgaggc 166  Q
      ||||  ||||| ||  |||||||||||  |||||||||  |||||||||||||||||| ||||    
T  19887652 atttgtatccattttacctttctgagagtgacaacacacttataatggcaagcaatcaacaaggc 19887588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 19357938 - 19358148
Alignment:
Q  1 tggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttcatattgatcatggcattggtgattggcttgcatatggttctcaattg 100  Q
    |||||||||||||||||||||||||||| | ||||||||||||||  ||||||| |||||| |||||| | ||||||||     || ||     ||| ||    
T  19357938 tggagttcaagagtcttggactcaattcttaaaaattagttttcaggatcttcaaattgattatggcagtagtgattgggagagatttgaggagcaaatg 19358037  T
Q  101 ttcttgttaccattgtatgtttctgagagtagcaacacactggtaatggcaagcaatcaacgaggcctcatttatggctatgaccgccaacatgcaattc 200  Q
    ||| | |||||||||| |||||||||||||| | |||||||| |||||||| |||| |||  ||||      ||||  | ||||   |||||||||||||    
T  19358038 ttcctattaccattgtgtgtttctgagagtaacgacacactgataatggcatgcaagcaagaaggc------tatgattttgacgaacaacatgcaattc 19358131  T
Q  201 tctataattggagagat 217  Q
    |||||||||||||||||    
T  19358132 tctataattggagagat 19358148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 19722046 - 19722211
Alignment:
Q  1 tggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttcatattgatcatg------gcattggtgattggcttgcatatggttct 94  Q
    |||||||||||| ||||||||||||||||||||||| |||||| | |||| | | |||||| ||       ||||| |||||   ||  |||||| ||||    
T  19722046 tggagttcaagattcttggactcaattcctcaaaatcagtttttagaatcatgaaattgatgattattatcgcattagtgatcttctaccatatgattct 19722145  T
Q  95 caattgttcttgttaccattgtatgtttctgagagtagcaacacactggtaatggcaagcaatcaa 160  Q
    ||||||||| |||| |||||||  ||||| |||||||| || |||||  |||||||||||||||||    
T  19722146 caattgttcctgttcccattgtgcgtttccgagagtaggaatacactaataatggcaagcaatcaa 19722211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 19351111 - 19351051
Alignment:
Q  1 tggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttcatattgat 61  Q
    ||||||| | ||||||||||||| |||||||||||||||||||||  ||||||| ||||||    
T  19351111 tggagttgaggagtcttggactccattcctcaaaattagttttcaggatcttcacattgat 19351051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 660887 - 660836
Alignment:
Q  3 gagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttca 54  Q
    ||||| |||||||||||||||||||||| |||||||||| ||| ||||||||    
T  660887 gagttgaagagtcttggactcaattccttaaaattagttatcataatcttca 660836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 24002228 - 24002280
Alignment:
Q  2 ggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttca 54  Q
    |||||||||||||||||||||||||| || || ||||||| ||| ||||||||    
T  24002228 ggagttcaagagtcttggactcaattacttaagattagttatcagaatcttca 24002280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 19351042 - 19350976
Alignment:
Q  94 tcaattgttcttgttaccattgtatgtttctgagagtagcaacacactggtaatggcaagcaatcaa 160  Q
    |||||||||| |||||||||||| ||||||| ||| |||| ||||| |  |||||| ||||||||||    
T  19351042 tcaattgttcgtgttaccattgtgtgtttctaagattagcgacacaattataatggtaagcaatcaa 19350976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 22028656 - 22028702
Alignment:
Q  1 tggagttcaagagtcttggactcaattcctcaaaattagttttcaaa 47  Q
    ||||||| ||||||||||||||||||| || || |||||||||||||    
T  22028656 tggagttgaagagtcttggactcaattacttaagattagttttcaaa 22028702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 6864849 - 6864796
Alignment:
Q  1 tggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttca 54  Q
    ||||||| |||||||||||||||| ||||| |||| ||||| ||| ||||||||    
T  6864849 tggagttgaagagtcttggactcagttccttaaaactagttatcataatcttca 6864796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 14076706 - 14076759
Alignment:
Q  1 tggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttca 54  Q
    ||||||| |||| |||||||||||||| || |||||||||| ||| ||||||||    
T  14076706 tggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttca 14076759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 14386734 - 14386787
Alignment:
Q  1 tggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttca 54  Q
    ||||||| |||| |||||||||||||| || |||||||||| ||| ||||||||    
T  14386734 tggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttca 14386787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 24010415 - 24010464
Alignment:
Q  5 gttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttca 54  Q
    ||||||||||||||||||||||| || || ||||||| ||| ||||||||    
T  24010415 gttcaagagtcttggactcaattacttaagattagttatcagaatcttca 24010464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 29454145 - 29454092
Alignment:
Q  1 tggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttca 54  Q
    ||||||| |||| ||||||||||||||| | |||||||||| |||| |||||||    
T  29454145 tggagttgaagattcttggactcaattctttaaaattagttatcaagatcttca 29454092  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 19344617 - 19344565
Alignment:
Q  1 tggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttc 53  Q
    ||||||| || | |||||||||||||| || |||||||||||||| |||||||    
T  19344617 tggagttgaacaatcttggactcaatttcttaaaattagttttcagaatcttc 19344565  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 22100521 - 22100561
Alignment:
Q  1 tggagttcaagagtcttggactcaattcctcaaaattagtt 41  Q
    |||||||||||||||||||||||| ||  ||||||||||||    
T  22100521 tggagttcaagagtcttggactcagttattcaaaattagtt 22100561  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 29874547 - 29874599
Alignment:
Q  9 aagagtcttggactcaattcctcaaaattagttttcaaaatcttcatattgat 61  Q
    |||| |||||||||| ||| || |||||||||| |||||||||||| ||||||    
T  29874547 aagattcttggactccattacttaaaattagttatcaaaatcttcaaattgat 29874599  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 14749425 - 14749463
Alignment:
Q  1 tggagttcaagagtcttggactcaattcctcaaaattag 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  14749425 tggagttcaagagtcttggactcaattcctcaaaattag 14749463  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 17369692 - 17369745
Alignment:
Q  1 tggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttca 54  Q
    ||||||| |||| |||||||||||||| || |||||||||| ||| ||||||||    
T  17369692 tggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttca 17369745  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 6921392 - 6921352
Alignment:
Q  1 tggagttcaagagtcttggactcaattcctcaaaattagtt 41  Q
    ||||||| |||| ||||||||||||||||| ||||||||||    
T  6921392 tggagttgaagaatcttggactcaattccttaaaattagtt 6921352  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 6935260 - 6935220
Alignment:
Q  1 tggagttcaagagtcttggactcaattcctcaaaattagtt 41  Q
    |||||||||||| ||||||||| ||||||| ||||||||||    
T  6935260 tggagttcaagaatcttggactaaattccttaaaattagtt 6935220  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 6947922 - 6947882
Alignment:
Q  1 tggagttcaagagtcttggactcaattcctcaaaattagtt 41  Q
    ||||||| |||| ||||||||||||||||| ||||||||||    
T  6947922 tggagttgaagaatcttggactcaattccttaaaattagtt 6947882  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 53774868 - 53774919
Alignment:
Q  1 tggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatctt 52  Q
    ||||||| |||||||||||||||||||||| |||||||||| ||| ||||||    
T  53774868 tggagttgaagagtcttggactcaattccttaaaattagttatcagaatctt 53774919  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 53790594 - 53790634
Alignment:
Q  14 tcttggactcaattcctcaaaattagttttcaaaatcttca 54  Q
    |||||||||||||| || |||||||||||||| ||||||||    
T  53790594 tcttggactcaatttcttaaaattagttttcagaatcttca 53790634  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 29597594 - 29597544
Alignment:
Q  1 tggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatct 51  Q
    ||||||| || | ||||||||||||||||| ||||||||||||||||||||    
T  29597594 tggagttgaacaatcttggactcaattccttaaaattagttttcaaaatct 29597544  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 29647717 - 29647754
Alignment:
Q  14 tcttggactcaattcctcaaaattagttttcaaaatct 51  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  29647717 tcttggactcaattccttaaaattagttttcaaaatct 29647754  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 29642400 - 29642437
Alignment:
Q  14 tcttggactcaattcctcaaaattagttttcaaaatct 51  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  29642400 tcttggactcaattccttaaaattagttttcagaatct 29642437  T

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Target: scaffold0867 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 4711 - 4671
Alignment:
Q  1 tggagttcaagagtcttggactcaattcctcaaaattagtt 41  Q
    |||||||||||||||||||||||| ||  ||||||||||||    
T  4711 tggagttcaagagtcttggactcagttattcaaaattagtt 4671  T

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