View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8400_low_3 (Length: 486)
Name: NF8400_low_3
Description: NF8400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8400_low_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 16 - 486
Target Start/End: Complemental strand, 54012931 - 54012461
Alignment:
| Q |
16 |
cagatatcacaatcttcaccacactgaaaaggacaccaatttctgcctctttatgcctctctttgacgcattaggcaatactcttaacaaaaattcatgg |
115 |
Q |
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| T |
54012931 |
cagatatcacaatcttcaccacactgaaaaggacaccaatttctgcctctttatgcctctctttgacgcattaggcaatactcttaacaaaaattcatgg |
54012832 |
T |
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| Q |
116 |
acattacacgaaacattaagttcaggttcaggtaattaacttgtcctatgattaattcactattttcatctaaatattaataatccacattatgataata |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
54012831 |
acattacacgaaacattaagttcaggttcaggtaattaacttgtcctatgattaattcactattttcatctaaatactaataatccacattatgataata |
54012732 |
T |
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| Q |
216 |
aagttgtattgaatctttatcaatgcaggaaatggcactacggtaccacattttgttttcttggctcatatggttgatatctcatcctgcatgcatgttc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54012731 |
aagttgtattgaatctttatcaatgcaggaaatggcgctacggtaccacgctttgttttcttggctcatatggttgatatctcatcctgcatgcatgttc |
54012632 |
T |
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| Q |
316 |
cgtttgttctgcgatccgcttcttcatttgcatacactacaagactcttcttcatcccatgtttgccggtaacctttttagttgtgatggcaatgtggct |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
54012631 |
cgtttgttctgcgatccgcttcttcatttgcatacactacaagactcttcttcatcccatgtttgccagtaacctttttagttgtgatggcaatgtggct |
54012532 |
T |
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| Q |
416 |
ttggtccaaaacatttttacttagtttctattacctccgaggtagactccaccaaacctgggttgtaccgc |
486 |
Q |
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| T |
54012531 |
ttggtccaaaacatttttacttagtttctattacctccgaggtagactccaccaaacctgggttgtaccgc |
54012461 |
T |
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